Conditional molecular design with deep generative models

S Kang, K Cho - Journal of chemical information and modeling, 2018 - ACS Publications
Although machine learning has been successfully used to propose novel molecules that
satisfy desired properties, it is still challenging to explore a large chemical space efficiently …

DENOPTIM: Software for Computational de Novo Design of Organic and Inorganic Molecules

M Foscato, V Venkatraman… - Journal of chemical …, 2019 - ACS Publications
A general-purpose software package, termed DE Novo OPTimization of In/organic
Molecules (DENOPTIM), for de novo design and virtual screening of functional molecules is …

When yield prediction does not yield prediction: an overview of the current challenges

V Voinarovska, M Kabeshov, D Dudenko… - Journal of Chemical …, 2023 - ACS Publications
Machine Learning (ML) techniques face significant challenges when predicting advanced
chemical properties, such as yield, feasibility of chemical synthesis, and optimal reaction …

Reinforced Adversarial Neural Computer for de Novo Molecular Design

E Putin, A Asadulaev, Y Ivanenkov… - Journal of chemical …, 2018 - ACS Publications
In silico modeling is a crucial milestone in modern drug design and development. Although
computer-aided approaches in this field are well-studied, the application of deep learning …

Generic mathematical programming formulation and solution for computer-aided molecular design

L Zhang, S Cignitti, R Gani - Computers & Chemical Engineering, 2015 - Elsevier
This short communication presents a generic mathematical programming formulation for
computer-aided molecular design (CAMD). A given CAMD problem, based on target …

Reinvent 4: Modern AI–driven generative molecule design

HH Loeffler, J He, A Tibo, JP Janet, A Voronov… - Journal of …, 2024 - Springer
REINVENT 4 is a modern open-source generative AI framework for the design of small
molecules. The software utilizes recurrent neural networks and transformer architectures to …

The synthesizability of molecules proposed by generative models

W Gao, CW Coley - Journal of chemical information and modeling, 2020 - ACS Publications
The discovery of functional molecules is an expensive and time-consuming process,
exemplified by the rising costs of small molecule therapeutic discovery. One class of …

Automated de novo design in medicinal chemistry: which types of chemistry does a generative neural network learn?

C Grebner, H Matter, AT Plowright… - Journal of Medicinal …, 2020 - ACS Publications
Artificial intelligence offers promising solutions for property prediction, compound design,
and retrosynthetic planning, which are expected to significantly accelerate the search for …

Comparative study of deep generative models on chemical space coverage

J Zhang, R Mercado, O Engkvist… - Journal of Chemical …, 2021 - ACS Publications
In recent years, deep molecular generative models have emerged as promising methods for
de novo molecular design. Thanks to the rapid advance of deep learning techniques, deep …

Past, present, and future perspectives on computer-aided drug design methodologies

D Bassani, S Moro - Molecules, 2023 - mdpi.com
The application of computational approaches in drug discovery has been consolidated in
the last decades. These families of techniques are usually grouped under the common …