Generative molecular design in low data regimes

M Moret, L Friedrich, F Grisoni, D Merk… - Nature Machine …, 2020 - nature.com
Generative machine learning models sample molecules from chemical space without the
need for explicit design rules. To enable the generative design of innovative molecular …

[HTML][HTML] New avenues in artificial-intelligence-assisted drug discovery

C Cerchia, A Lavecchia - Drug Discovery Today, 2023 - Elsevier
Over the past decade, the amount of biomedical data available has grown at unprecedented
rates. Increased automation technology and larger data volumes have encouraged the use …

Evaluation guidelines for machine learning tools in the chemical sciences

A Bender, N Schneider, M Segler… - Nature Reviews …, 2022 - nature.com
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …

Conformer Generation for Structure-Based Drug Design: How Many and How Good?

AT McNutt, F Bisiriyu, S Song, A Vyas… - Journal of Chemical …, 2023 - ACS Publications
Conformer generation, the assignment of realistic 3D coordinates to a small molecule, is
fundamental to structure-based drug design. Conformational ensembles are required for …

GENERA: a combined genetic/deep-learning algorithm for multiobjective target-oriented de novo design

G Lamanna, P Delre, G Marcou… - Journal of Chemical …, 2023 - ACS Publications
This study introduces a new de novo design algorithm called GENERA that combines the
capabilities of a deep-learning algorithm for automated drug-like analogue design, called …

ChemTS: an efficient python library for de novo molecular generation

X Yang, J Zhang, K Yoshizoe… - … and technology of …, 2017 - Taylor & Francis
Automatic design of organic materials requires black-box optimization in a vast chemical
space. In conventional molecular design algorithms, a molecule is built as a combination of …

Bayesian molecular design with a chemical language model

H Ikebata, K Hongo, T Isomura, R Maezono… - Journal of computer …, 2017 - Springer
The aim of computational molecular design is the identification of promising hypothetical
molecules with a predefined set of desired properties. We address the issue of accelerating …

[HTML][HTML] Machine learning in chemical engineering: strengths, weaknesses, opportunities, and threats

MR Dobbelaere, PP Plehiers, R Van de Vijver… - Engineering, 2021 - Elsevier
Chemical engineers rely on models for design, research, and daily decision-making, often
with potentially large financial and safety implications. Previous efforts a few decades ago to …

The hitchhiker's guide to deep learning driven generative chemistry

Y Ivanenkov, B Zagribelnyy, A Malyshev… - ACS Medicinal …, 2023 - ACS Publications
This microperspective covers the most recent research outcomes of artificial intelligence (AI)
generated molecular structures from the point of view of the medicinal chemist. The main …

TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data

D Sydow, A Morger, M Driller, A Volkamer - Journal of cheminformatics, 2019 - Springer
Owing to the increase in freely available software and data for cheminformatics and
structural bioinformatics, research for computer-aided drug design (CADD) is more and …