NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

W de Koning, M Miladi, S Hiltemann, A Heikema… - …, 2020 - academic.oup.com
Background Long-read sequencing can be applied to generate very long contigs and even
completely assembled genomes at relatively low cost and with minimal sample preparation …

Nanopore sequencing: electrical measurements of the code of life

W Timp, UM Mirsaidov, D Wang… - IEEE transactions on …, 2010 - ieeexplore.ieee.org
Sequencing a single molecule of deoxyribonucleic acid (DNA) using a nanopore is a
revolutionary concept because it combines the potential for long read lengths (> 5 kbp) with …

Nanopore sequencing for de novo bacterial genome assembly and search for single-nucleotide polymorphism

MG Khrenova, TV Panova, VA Rodin… - International Journal of …, 2022 - mdpi.com
Nanopore sequencing (ONT) is a new and rapidly developing method for determining
nucleotide sequences in DNA and RNA. It serves the ability to obtain long reads of …

NanoPipe—a web server for nanopore MinION sequencing data analysis

V Shabardina, T Kischka, F Manske… - …, 2019 - academic.oup.com
Background The fast-moving progress of the third-generation long-read sequencing
technologies will soon bring the biological and medical sciences to a new era of research …

Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing

AM Taxt, E Avershina, SA Frye, U Naseer, R Ahmad - Scientific reports, 2020 - nature.com
Bloodstream infections (BSI) and sepsis are major causes of morbidity and mortality
worldwide. Blood culture-based diagnostics usually requires 1–2 days for identification of …

DNA nanotechnology assisted nanopore-based analysis

T Ding, J Yang, V Pan, N Zhao, Z Lu, Y Ke… - Nucleic acids …, 2020 - academic.oup.com
Nanopore technology is a promising label-free detection method. However, challenges exist
for its further application in sequencing, clinical diagnostics and ultra-sensitive single …

DNA sequencing with nanopores

GF Schneider, C Dekker - Nature biotechnology, 2012 - nature.com
DNA sequencing with nanopores | Nature Biotechnology Skip to main content Thank you for
visiting nature.com. You are using a browser version with limited support for CSS. To obtain …

Three decades of nanopore sequencing

D Deamer, M Akeson, D Branton - Nature biotechnology, 2016 - nature.com
A long-held goal in sequencing has been to use a voltage-biased nanoscale pore in a
membrane to measure the passage of a linear, single-stranded (ss) DNA or RNA molecule …

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

D Senol Cali, JS Kim, S Ghose, C Alkan… - Briefings in …, 2019 - academic.oup.com
Nanopore sequencing technology has the potential to render other sequencing
technologies obsolete with its ability to generate long reads and provide portability …

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches

Y Cherukuri, SC Janga - BMC genomics, 2016 - Springer
Background Improved DNA sequencing methods have transformed the field of genomics
over the last decade. This has become possible due to the development of inexpensive …