A single-cell transcriptome atlas of human early embryogenesis

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, L Wang… - BioRxiv, 2021 - biorxiv.org
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4-to 6-week human embryos when …

A single-cell transcriptome atlas profiles early organogenesis in human embryos

Y Xu, T Zhang, Q Zhou, M Hu, Y Qi, Y Xue, Y Nie… - Nature cell …, 2023 - nature.com
The early window of human embryogenesis is largely a black box for developmental
biologists. Here we probed the cellular diversity of 4–6 week human embryos when …

[HTML][HTML] Transcriptome analysis of early organogenesis in human embryos

H Fang, Y Yang, C Li, S Fu, Z Yang, G Jin, K Wang… - Developmental cell, 2010 - cell.com
Genome-wide expression analysis of embryonic development provides information that is
useful in a variety of contexts. Here, we report transcriptome profiles of human early embryos …

Three-dimensional molecular architecture of mouse organogenesis

F Qu, W Li, J Xu, R Zhang, J Ke, X Ren, X Meng… - Nature …, 2023 - nature.com
Mammalian embryos exhibit sophisticated cellular patterning that is intricately orchestrated
at both molecular and cellular level. It has recently become apparent that cells within the …

3D reconstruction of a gastrulating human embryo

Z Xiao, L Cui, Y Yuan, N He, X Xie, S Lin, X Yang… - Cell, 2024 - cell.com
Progress in understanding early human development has been impeded by the scarcity of
reference datasets from natural embryos, particularly those with spatial information during …

Single-cell analysis of embryoids reveals lineage diversification roadmaps of early human development

Y Zheng, RZ Yan, S Sun, M Kobayashi, L Xiang… - Cell stem cell, 2022 - cell.com
Despite its clinical and fundamental importance, our understanding of early human
development remains limited. Stem cell-derived, embryo-like structures (or embryoids) …

Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis

J Dong, Y Hu, X Fan, X Wu, Y Mao, B Hu, H Guo… - Genome biology, 2018 - Springer
Background Organogenesis is crucial for proper organ formation during mammalian
embryonic development. However, the similarities and shared features between different …

Tracking early mammalian organogenesis–prediction and validation of differentiation trajectories at whole organism scale

I Imaz-Rosshandler, C Rode, C Guibentif… - …, 2024 - journals.biologists.com
Early organogenesis represents a key step in animal development, during which pluripotent
cells diversify to initiate organ formation. Here, we sampled 300,000 single-cell …

Rabbit development as a model for single cell comparative genomics

MLN Ton, D Keitley, B Theeuwes, C Guibentif… - bioRxiv, 2022 - biorxiv.org
Biomedical research relies heavily on the use of model organisms to gain insight into human
health and development. Traditionally, the mouse has been the favored vertebrate model …

Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - BioRxiv, 2020 - biorxiv.org
Transcriptional and epigenetic profiling of single-cells has advanced our knowledge of the
molecular bases of gastrulation and early organogenesis. However, current approaches rely …