Network analysis of GWAS data

MDM Leiserson, JV Eldridge, S Ramachandran… - Current opinion in …, 2013 - Elsevier
Genome-wide association studies (GWAS) identify genetic variants that distinguish a control
population from a population with a specific trait. Two challenges in GWAS are:(1) …

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Z Zhu, F Zhang, H Hu, A Bakshi, MR Robinson… - Nature …, 2016 - nature.com
Genome-wide association studies (GWAS) have identified thousands of genetic variants
associated with human complex traits. However, the genes or functional DNA elements …

[HTML][HTML] A random forest approach to capture genetic effects in the presence of population structure

J Stephan, O Stegle, A Beyer - Nature communications, 2015 - nature.com
The accurate mapping of causal variants in genome-wide association studies requires the
consideration of both, confounding factors (for example, population structure) and nonlinear …

The effects of human population structure on large genetic association studies

J Marchini, LR Cardon, MS Phillips, P Donnelly - Nature genetics, 2004 - nature.com
Large-scale association studies hold substantial promise for unraveling the genetic basis of
common human diseases. A well-known problem with such studies is the presence of …

Demographic history mediates the effect of stratification on polygenic scores

AA Zaidi, I Mathieson - Elife, 2020 - elifesciences.org
Population stratification continues to bias the results of genome-wide association studies
(GWAS). When these results are used to construct polygenic scores, even subtle biases can …

An atlas of genetic correlations across human diseases and traits

B Bulik-Sullivan, HK Finucane, V Anttila, A Gusev… - Nature …, 2015 - nature.com
Identifying genetic correlations between complex traits and diseases can provide useful
etiological insights and help prioritize likely causal relationships. The major challenges …

Meta‐analysis of sex‐specific genome‐wide association studies

R Magi, CM Lindgren, AP Morris - Genetic epidemiology, 2010 - Wiley Online Library
Despite the success of genome‐wide association studies, much of the genetic contribution
to complex human traits is still unexplained. One potential source of genetic variation that …

Embracing polygenicity: a review of methods and tools for psychiatric genetics research

RM Maier, PM Visscher, MR Robinson… - Psychological …, 2018 - cambridge.org
The availability of genome-wide genetic data on hundreds of thousands of people has led to
an equally rapid growth in methodologies available to analyse these data. While the …

[HTML][HTML] Failure to replicate a genetic association may provide important clues about genetic architecture

CS Greene, NM Penrod, SM Williams, JH Moore - PloS one, 2009 - journals.plos.org
Replication has become the gold standard for assessing statistical results from genome-
wide association studies. Unfortunately this replication requirement may cause real genetic …

Detection and interpretation of shared genetic influences on 42 human traits

JK Pickrell, T Berisa, JZ Liu, L Ségurel, JY Tung… - Nature …, 2016 - nature.com
We performed a scan for genetic variants associated with multiple phenotypes by comparing
large genome-wide association studies (GWAS) of 42 traits or diseases. We identified 341 …