Robust relationship inference in genome-wide association studies

A Manichaikul, JC Mychaleckyj, SS Rich, K Daly… - …, 2010 - academic.oup.com
Motivation: Genome-wide association studies (GWASs) have been widely used to map loci
contributing to variation in complex traits and risk of diseases in humans. Accurate …

Variance component model to account for sample structure in genome-wide association studies

HM Kang, JH Sul, SK Service, NA Zaitlen, S Kong… - Nature …, 2010 - nature.com
Although genome-wide association studies (GWASs) have identified numerous loci
associated with complex traits, imprecise modeling of the genetic relatedness within study …

[PDF][PDF] Model-free estimation of recent genetic relatedness

MP Conomos, AP Reiner, BS Weir… - The American Journal of …, 2016 - cell.com
Genealogical inference from genetic data is essential for a variety of applications in human
genetics. In genome-wide and sequencing association studies, for example, accurate …

[HTML][HTML] Further improvements to linear mixed models for genome-wide association studies

C Widmer, C Lippert, O Weissbrod, N Fusi, C Kadie… - Scientific reports, 2014 - nature.com
We examine improvements to the linear mixed model (LMM) that better correct for
population structure and family relatedness in genome-wide association studies (GWAS) …

[HTML][HTML] A genomic background based method for association analysis in related individuals

N Amin, CM Van Duijn, YS Aulchenko - PloS one, 2007 - journals.plos.org
Background Feasibility of genotyping of hundreds and thousands of single nucleotide
polymorphisms (SNPs) in thousands of study subjects have triggered the need for fast …

Population structure and cryptic relatedness in genetic association studies

W Astle, DJ Balding - 2009 - projecteuclid.org
We review the problem of confounding in genetic association studies, which arises
principally because of population structure and cryptic relatedness. Many treatments of the …

[HTML][HTML] Relationship estimation from whole-genome sequence data

H Li, G Glusman, H Hu, J Caballero, R Hubley… - PLoS …, 2014 - journals.plos.org
The determination of the relationship between a pair of individuals is a fundamental
application of genetics. Previously, we and others have demonstrated that identity-by …

Comparison of methods for estimating genetic correlation between complex traits using GWAS summary statistics

Y Zhang, Y Cheng, W Jiang, Y Ye, Q Lu… - Briefings in …, 2021 - academic.oup.com
Genetic correlation is the correlation of phenotypic effects by genetic variants across the
genome on two phenotypes. It is an informative metric to quantify the overall genetic …

[PDF][PDF] Estimating kinship in admixed populations

T Thornton, H Tang, TJ Hoffmann… - The American Journal of …, 2012 - cell.com
Genome-wide association studies (GWASs) are commonly used for the mapping of genetic
loci that influence complex traits. A problem that is often encountered in both population …

Logistic regression protects against population structure in genetic association studies

E Setakis, H Stirnadel, DJ Balding - Genome research, 2006 - genome.cshlp.org
We conduct an extensive simulation study to compare the merits of several methods for
using null (unlinked) markers to protect against false positives due to cryptic substructure in …