Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Z Miao, MS Balzer, Z Ma, H Liu, J Wu… - Nature …, 2021 - nature.com
Determining the epigenetic program that generates unique cell types in the kidney is critical
for understanding cell-type heterogeneity during tissue homeostasis and injury response …

Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney

Y Muto, PC Wilson, N Ledru, H Wu, H Dimke… - Nature …, 2021 - nature.com
The integration of single cell transcriptome and chromatin accessibility datasets enables a
deeper understanding of cell heterogeneity. We performed single nucleus ATAC (snATAC …

[HTML][HTML] Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney

A Ransick, NO Lindström, J Liu, Q Zhu, JJ Guo… - Developmental cell, 2019 - cell.com
Chronic kidney disease affects 10% of the population with notable differences in ethnic and
sex-related susceptibility to kidney injury and disease. Kidney dysfunction leads to …

Single cell dissection of early kidney development: multilineage priming

EW Brunskill, JS Park, E Chung, F Chen… - …, 2014 - journals.biologists.com
We used a single cell RNA-seq strategy to create an atlas of gene expression patterns in the
developing kidney. At several stages of kidney development, histologically uniform …

[HTML][HTML] Understanding the kidney one cell at a time

J Park, CL Liu, J Kim, K Susztak - Kidney international, 2019 - Elsevier
A revolution in cellular measurement technology is underway. Whereas prior studies have
been able to analyze only the averaged outputs from renal tissue, we now can accurately …

Molecular determinants of nephron vascular specialization in the kidney

DM Barry, EA McMillan, B Kunar, R Lis, T Zhang… - Nature …, 2019 - nature.com
Although kidney parenchymal tissue can be generated in vitro, reconstructing the complex
vasculature of the kidney remains a daunting task. The molecular pathways that specify and …

A single-cell transcriptome atlas of the mouse glomerulus

N Karaiskos, M Rahmatollahi… - Journal of the …, 2018 - journals.lww.com
Background Three different cell types constitute the glomerular filter: mesangial cells,
endothelial cells, and podocytes. However, to what extent cellular heterogeneity exists …

A single-cell multiomic analysis of kidney organoid differentiation

Y Yoshimura, Y Muto, N Ledru, H Wu… - Proceedings of the …, 2023 - National Acad Sciences
Kidney organoids differentiated from pluripotent stem cells are powerful models of kidney
development and disease but are characterized by cell immaturity and off-target cell fates …

Targeted single-cell RNA-seq identifies minority cell types of kidney distal nephron

L Chen, CL Chou, MA Knepper - Journal of the American Society …, 2021 - journals.lww.com
Background Proximal tubule cells dominate the kidney parenchyma numerically, although
less abundant cell types of the distal nephron have disproportionate roles in water and …

Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk

AN Combes, B Phipson, KT Lawlor, A Dorison… - …, 2019 - journals.biologists.com
Recent advances in the generation of kidney organoids and the culture of primary nephron
progenitors from mouse and human have been based on knowledge of the molecular basis …