Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy

M Shintani, ZK Sanchez, K Kimbara - Frontiers in microbiology, 2015 - frontiersin.org
Plasmids are important “vehicles” for the communication of genetic information between
bacteria. The exchange of plasmids transmits pathogenically and environmentally relevant …

Identification of bacterial plasmids based on mobility and plasmid population biology

MP Garcillán-Barcia, A Alvarado… - FEMS microbiology …, 2011 - academic.oup.com
Plasmids contain a backbone of core genes that remains relatively stable for long
evolutionary periods, making sense to speak about plasmid species. The identification and …

Broad host range plasmids

A Jain, P Srivastava - FEMS microbiology letters, 2013 - academic.oup.com
Plasmids are and will remain important cloning vehicles for biotechnology. They have also
been associated with the spread of a number of diseases and therefore are a subject of …

Mobility of plasmids

C Smillie, MP Garcillán-Barcia… - Microbiology and …, 2010 - Am Soc Microbiol
Plasmids are key vectors of horizontal gene transfer and essential genetic engineering tools.
They code for genes involved in many aspects of microbial biology, including detoxication …

Identification and classification of bacterial plasmids

M Couturier, F Bex, PL Bergquist… - Microbiological …, 1988 - Am Soc Microbiol
Identification and classification has always been an impor-tant aspect of the study of living
organisms. This statement applies not only to higher plants and animals, but also to …

[HTML][HTML] Plasmid classifications

MP Garcillán-Barcia, S Redondo-Salvo, F de la Cruz - Plasmid, 2023 - Elsevier
Plasmids are universally present in bacteria and play key roles in the dissemination of
genes such as antibiotic resistance determinants. Major concepts in Plasmid Biology derive …

Predicting plasmid promiscuity based on genomic signature

H Suzuki, H Yano, CJ Brown, EM Top - Journal of bacteriology, 2010 - Am Soc Microbiol
Despite the important contribution of self-transmissible plasmids to bacterial evolution, little
is understood about the range of hosts in which these plasmids have evolved. Our goal was …

Plasmid detection, characterization, and ecology

K Smalla, S Jechalke, EM Top - Microbiology spectrum, 2015 - Am Soc Microbiol
Plasmids are important vehicles for rapid adaptation of bacterial populations to changing
environmental conditions. It is thought that to reduce the cost of plasmid carriage, only a …

PLSDB: a resource of complete bacterial plasmids

V Galata, T Fehlmann, C Backes… - Nucleic acids …, 2019 - academic.oup.com
The study of bacterial isolates or communities requires the analysis of the therein included
plasmids in order to provide an extensive characterization of the organisms. Plasmids …

Large-scale analysis of plasmid relationships through gene-sharing networks

M Tamminen, M Virta, R Fani… - Molecular Biology and …, 2012 - academic.oup.com
Plasmids are vessels of genetic exchange in microbial communities. They are known to
transfer between different host organisms and acquire diverse genetic elements from …