Transcriptional mechanisms of cell fate decisions revealed by single cell expression profiling

V Moignard, B Göttgens - Bioessays, 2014 - Wiley Online Library
Transcriptional networks regulate cell fate decisions, which occur at the level of individual
cells. However, much of what we know about their structure and function comes from studies …

Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time

AL Zacharias, JI Murray - genesis, 2016 - Wiley Online Library
Understanding how a single cell, the zygote, can divide and differentiate to produce the
diverse animal cell types is a central goal of developmental biology research. The model …

Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish

E Tsingos, B Höckendorf, T Sütterlin, S Kirchmaier… - Elife, 2019 - elifesciences.org
Combining clonal analysis with a computational agent based model, we investigate how
tissue-specific stem cells for neural retina (NR) and retinal pigmented epithelium (RPE) of …

Tracing developmental lineages

B Raj - Nature Methods, 2023 - nature.com
Tracing developmental lineages | Nature Methods Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

Theory and practice of lineage tracing

YC Hsu - Stem Cells, 2015 - academic.oup.com
Lineage tracing is a method that delineates all progeny produced by a single cell or a group
of cells. The possibility of performing lineage tracing initiated the field of Developmental …

Cell lineage determination in state space: a systems view brings flexibility to dogmatic canonical rules

S Huang - PLoS biology, 2010 - journals.plos.org
The quest for the origin of diversity in biology is as old as the discipline itself. Much as
evolutionary biologists sought to fathom the diversification of life forms into discrete, self …

[HTML][HTML] Identifying gene expression modules that define human cell fates

I Germanguz, J Listgarten, J Cinkornpumin, A Solomon… - Stem cell …, 2016 - Elsevier
Using a compendium of cell-state-specific gene expression data, we identified genes that
uniquely define cell states, including those thought to represent various developmental …

Defining cellular identity through network biology

P Cahan, SA Morris, JJ Collins, GQ Daley - Cell Cycle, 2014 - Taylor & Francis
Mechanisms of development rank among the great conundrums of biology: how are the
diverse cell types that comprise an adult organism generated from a single genome? While …

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

DE Wagner, C Weinreb, ZM Collins, JA Briggs… - Science, 2018 - science.org
High-throughput mapping of cellular differentiation hierarchies from single-cell data
promises to empower systematic interrogations of vertebrate development and disease …

Dissecting cell identity via network inference and in silico gene perturbation

K Kamimoto, B Stringa, CM Hoffmann, K Jindal… - Nature, 2023 - nature.com
Cell identity is governed by the complex regulation of gene expression, represented as gene-
regulatory networks. Here we use gene-regulatory networks inferred from single-cell multi …