The ongoing SARS-CoV-2 pandemic demonstrates the utility of real-time sequence analysis
in monitoring and surveillance of pathogens. However, cost-effective sequencing requires …

Motivation Amplicon-based nanopore sequencing is increasingly used for molecular
surveillance during epidemics (eg ZIKA, EBOLA) or pandemics (eg SARS-CoV-2). However …

Nanopore sequencing has been widely used for the real-time detection and surveillance of
pathogens with portable MinION. Nanopore adaptive sequencing can enrich on-target …

In response to the SARS-CoV-2 pandemic, a highly increased sequencing effort has been
established worldwide to track and trace ongoing viral evolution. Technologies, such as …

Enrichment of DNA by hybridisation is an important tool which enables users to gather target-
focused next-generation sequence data in an economical fashion. Current in-solution …

Surveillance of the SARS-CoV-2 variants including the quickly spreading mutants by rapid
and near real-time sequencing of the viral genome provides an important tool for effective …

Motivation InterARTIC is an interactive web application for the analysis of viral whole-
genome sequencing (WGS) data generated on Oxford Nanopore Technologies (ONT) …

Since December 2019, a novel coronavirus responsible for a severe acute respiratory
syndrome (SARS-CoV-2) is accountable for a major pandemic situation. The emergence of …

Whole genome sequencing can be used to characterize and to trace viral outbreaks.
Nanopore-based whole genome sequencing protocols have been described for several …

Emerging and re-emerging infectious diseases have given rise to a large number of human
infections, morbidity, and heavy economic burden, including the Middle East respiratory …