Applications of multi-omics technologies for crop improvement

Y Yang, MA Saand, L Huang, WB Abdelaal… - Frontiers in Plant …, 2021 - frontiersin.org
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …

Genomic selection in plant breeding: methods, models, and perspectives

J Crossa, P Pérez-Rodríguez, J Cuevas… - Trends in plant …, 2017 - cell.com
Genomic selection (GS) facilitates the rapid selection of superior genotypes and accelerates
the breeding cycle. In this review, we discuss the history, principles, and basis of GS and …

Phenomic selection is a low-cost and high-throughput method based on indirect predictions: proof of concept on wheat and poplar

R Rincent, JP Charpentier… - G3: Genes …, 2018 - academic.oup.com
Genomic selection-the prediction of breeding values using DNA polymorphisms-is a
disruptive method that has widely been adopted by animal and plant breeders to increase …

Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models

JD Washburn, MB Burch, JAV Franco - Crop Science, 2020 - Wiley Online Library
Maize (Zea mays L.) has been a focus of scientific research and breeding for over a century.
It is also one of the most economically important crops in the world, with a value of …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Deep learning for plant genomics and crop improvement

H Wang, E Cimen, N Singh, E Buckler - Current opinion in plant biology, 2020 - Elsevier
Our era has witnessed tremendous advances in plant genomics, characterized by an
explosion of high-throughput techniques to identify multi-dimensional genome-wide …

Genome–environment associations, an innovative tool for studying heritable evolutionary adaptation in orphan crops and wild relatives

AJ Cortés, F López-Hernández, MW Blair - Frontiers in Genetics, 2022 - frontiersin.org
Leveraging innovative tools to speed up prebreeding and discovery of genotypic sources of
adaptation from landraces, crop wild relatives, and orphan crops is a key prerequisite to …

Model-assisted phenotyping and ideotype design

P Martre, B Quilot-Turion, D Luquet, MMOS Memmah… - Crop physiology, 2015 - Elsevier
By formalizing traits as the result of genotypic and environmental effects and the relations
among traits, ecophysiological models (or process-based models) provide a platform for …

Applications and trends of machine learning in genomics and phenomics for next-generation breeding

S Esposito, D Carputo, T Cardi, P Tripodi - Plants, 2019 - mdpi.com
Crops are the major source of food supply and raw materials for the processing industry. A
balance between crop production and food consumption is continually threatened by plant …

Multi-omics revolution to promote plant breeding efficiency

U Mahmood, X Li, Y Fan, W Chang, Y Niu, J Li… - Frontiers in Plant …, 2022 - frontiersin.org
Crop production is the primary goal of agricultural activities, which is always taken into
consideration. However, global agricultural systems are coming under increasing pressure …