Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy

T Vercauteren, A Perchant, G Malandain, X Pennec… - Medical image …, 2006 - Elsevier
Real-time in vivo and in situ imaging at the cellular level can be achieved with fibered
confocal microscopy. As interesting as dynamic sequences may be, there is a need for the …

Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences

T Vercauteren, A Perchant, X Pennec… - Medical Image Computing …, 2005 - Springer
Fibered confocal microscopy allows in vivo and in situ imaging with cellular resolution. The
potentiality of this imaging modality is extended in this work by using video mosaicing …

In vivo micro-image mosaicing

KE Loewke, DB Camarillo… - IEEE Transactions …, 2010 - ieeexplore.ieee.org
Recent advances in optical imaging have led to the development of miniature microscopes
that can be brought to the patient for visualizing tissue structures in vivo. These devices have …

Patch-based nonlinear image registration for gigapixel whole slide images

J Lotz, J Olesch, B Müller, T Polzin… - IEEE Transactions …, 2015 - ieeexplore.ieee.org
Objective: Image registration of whole slide histology images allows the fusion of fine-
grained information—like different immunohistochemical stains—from neighboring tissue …

An open-source whole slide image registration workflow at cellular precision using Fiji, QuPath and Elastix

N Chiaruttini, O Burri, P Haub, R Guiet… - Frontiers in Computer …, 2022 - frontiersin.org
Image analysis workflows for Histology increasingly require the correlation and combination
of measurements across several whole slide images. Indeed, for multiplexing, as well as …

Registration and 3D visualization of large microscopy images

K Mosaliganti, T Pan, R Sharp… - Medical imaging …, 2006 - spiedigitallibrary.org
Inactivation of the retinoblastoma gene in mouse embryos causes tissue infiltrations into
critical sections of the placenta, which has been shown to affect fetal survivability. Our …

Nonrigid registration of 3-D multichannel microscopy images of cell nuclei

S Yang, D Kohler, K Teller, T Cremer… - … on Image Processing, 2008 - ieeexplore.ieee.org
We present an intensity-based nonrigid registration approach for the normalization of 3-D
multichannel microscopy images of cell nuclei. A main problem with cell nuclei images is …

Mosaicing of microscope images with global geometric and radiometric corrections

C Sun, R Beare, V Hilsenstein… - Journal of …, 2006 - Wiley Online Library
Image mosaicing has found a number of applications such as panoramic imaging, digital
terrain mapping, ophthalmology and virtual microscopy. In this study, we present an …

High speed, line-scanning, fiber bundle fluorescence confocal endomicroscopy for improved mosaicking

M Hughes, GZ Yang - Biomedical optics express, 2015 - opg.optica.org
A significant limitation of fiber bundle endomicroscopy systems is that the field of view tends
to be small, usually only several hundred micrometers in diameter. Image mosaicking …

Real-time image mosaicing with a hand-held dual-axes confocal microscope

K Loewke, D Camarillo… - Endoscopic …, 2008 - spiedigitallibrary.org
In recent years there has been growing interest in using confocal microscopy to observe
tissue structure and function for in vivo pathology. Although confocal microscopy can provide …