Integrated single cell analysis of human lung fibrosis resolves cellular origins of predictive protein signatures in body fluids

CH Mayr, LM Simon, G Leuschner, M Ansari, PE Geyer… - MedRxiv, 2020 - medrxiv.org
Single cell genomics enables characterization of disease specific cell states, while
improvements in mass spectrometry workflows bring the clinical use of body fluid proteomics …

Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers

CH Mayr, LM Simon, G Leuschner, M Ansari… - EMBO molecular …, 2021 - embopress.org
The correspondence of cell state changes in diseased organs to peripheral protein
signatures is currently unknown. Here, we generated and integrated single‐cell …

Single-cell transcriptomic analysis of human lung reveals complex multicellular changes during pulmonary fibrosis

PA Reyfman, JM Walter, N Joshi, KR Anekalla… - BioRxiv, 2018 - biorxiv.org
Pulmonary fibrosis is a devastating disorder that results in the progressive replacement of
normal lung tissue with fibrotic scar. Available therapies slow disease progression, but most …

Insights gained in the pathology of lung disease through single‐cell transcriptomics

G Carraro, BR Stripp - The Journal of Pathology, 2022 - Wiley Online Library
The human lung is a relatively quiescent organ in the normal healthy state but contains
stem/progenitor cells that contribute to normal tissue maintenance and either repair or …

Single cell RNA-seq and mass cytometry reveals a novel and a targetable population of macrophages in idiopathic pulmonary fibrosis

EA Ayaub, S Poli, J Ng, T Adams, J Schupp… - BioRxiv, 2021 - biorxiv.org
In this study, we leveraged a combination of single cell RNAseq, cytometry by time of flight
(CyTOF), and flow cytometry to study the biology of a unique macrophage population in …

Single Cell RNA Sequencing Reveals Altered T-Cell Repertoire and Gene Expression in the Peripheral Blood and Lungs of Patients with Idiopathic Pulmonary …

A Unterman, N Neumark, A Zhao… - A95. NOVEL INSIGHT …, 2020 - atsjournals.org
Rationale: Little is known about the involvement of T-cells in idiopathic pulmonary fibrosis
(IPF). We employed single-cell RNA sequencing (scRNA-seq) to identify shifts in T-cell …

Demystifying the Enigmatic Fibroblast in Pulmonary Fibrosis

Y Zhou, VJ Thannickal - American Journal of Respiratory Cell and …, 2023 - atsjournals.org
Fibroblasts, the major extracellular matrix (ECM) producing cells, participate in lung
development, homeostasis, and disease (1). While fibroblast phenotype and function have …

Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis

PA Reyfman, JM Walter, N Joshi… - American journal of …, 2019 - atsjournals.org
Rationale: The contributions of diverse cell populations in the human lung to pulmonary
fibrosis pathogenesis are poorly understood. Single-cell RNA sequencing can reveal …

Dissecting lung development and fibrosis at single-cell resolution

DL Farber, PA Sims - Genome medicine, 2019 - Springer
Editorial summary Single-cell transcriptome profiling has enabled high-resolution analysis of
cellular populations in tissues during development, health, and disease. Recent studies …

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu… - Nature …, 2019 - nature.com
Tissue fibrosis is a major cause of mortality that results from the deposition of matrix proteins
by an activated mesenchyme. Macrophages accumulate in fibrosis, but the role of specific …