A single-step competitive binding assay for mapping of single DNA molecules

LK Nyberg, F Persson, J Berg, J Bergström… - Biochemical and …, 2012 - Elsevier
Optical mapping of genomic DNA is of relevance for a plethora of applications such as
scaffolding for sequencing and detection of structural variations as well as identification of …

Enzyme-free optical DNA mapping of the human genome using competitive binding

V Müller, A Dvirnas, J Andersson, V Singh… - Nucleic acids …, 2019 - academic.oup.com
Optical DNA mapping (ODM) allows visualization of long-range sequence information along
single DNA molecules. The data can for example be used for detecting long range structural …

Competitive binding-based optical DNA mapping for fast identification of bacteria-multi-ligand transfer matrix theory and experimental applications on Escherichia coli

AN Nilsson, G Emilsson, LK Nyberg… - Nucleic acids …, 2014 - academic.oup.com
We demonstrate a single DNA molecule optical mapping assay able to resolve a specific
Escherichia coli strain from other strains. The assay is based on competitive binding of the …

Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy

M Levy-Sakin, Y Ebenstein - Current opinion in biotechnology, 2013 - Elsevier
Next generation sequencing (NGS) is revolutionizing all fields of biological research but it
fails to extract the full range of information associated with genetic material. Optical mapping …

Optical DNA mapping in nanofluidic devices: principles and applications

V Müller, F Westerlund - Lab on a Chip, 2017 - pubs.rsc.org
Optical DNA mapping has over the last decade emerged as a very powerful tool for
obtaining long range sequence information from single DNA molecules. In optical DNA …

Rapid DNA mapping by fluorescent single molecule detection

M Xiao, A Phong, C Ha, TF Chan, D Cai… - Nucleic acids …, 2007 - academic.oup.com
DNA mapping is an important analytical tool in genomic sequencing, medical diagnostics
and pathogen identification. Here we report an optical DNA mapping strategy based on …

Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale

J Jeffet, S Margalit, Y Michaeli… - Essays in …, 2021 - portlandpress.com
The human genome contains multiple layers of information that extend beyond the genetic
sequence. In fact, identical genetics do not necessarily yield identical phenotypes as evident …

Optical mapping of DNA: Single‐molecule‐based methods for mapping genomes

RK Neely, J Deen, J Hofkens - Biopolymers, 2011 - Wiley Online Library
The technologies associated with DNA sequencing are rapidly evolving. Indeed, single‐
molecule DNA sequencing strategies are cheaper and faster than ever before. Despite this …

Denaturation mapping of Saccharomyces cerevisiae

RL Welch, R Sladek, K Dewar, WW Reisner - Lab on a Chip, 2012 - pubs.rsc.org
Optical mapping of DNA provides large-scale genomic information that can be used to
assemble contigs from next-generation sequencing, and to detect rearrangements between …

[HTML][HTML] Multiplexed detection of pathogen DNA with DNA-based fluorescence nanobarcodes

Y Li, YTH Cu, D Luo - Nature biotechnology, 2005 - nature.com
Rapid, multiplexed, sensitive and specific molecular detection is of great demand in gene
profiling, drug screening, clinical diagnostics and environmental analysis,,. One of the major …