Deep learning approaches for lncrna-mediated mechanisms: A comprehensive review of recent developments

Y Kim, M Lee - International journal of molecular sciences, 2023 - mdpi.com
This review paper provides an extensive analysis of the rapidly evolving convergence of
deep learning and long non-coding RNAs (lncRNAs). Considering the recent advancements …

Long noncoding RNA: a crosslink in biological regulatory network

Y Zhang, Y Tao, Q Liao - Briefings in bioinformatics, 2018 - academic.oup.com
Long noncoding RNAs (lncRNAs) had been defined as a novel class of functional RNAs
longer than 200 nucleotides around a decade ago. It is widely acknowledged that lncRNAs …

On the classification of long non-coding RNAs

L Ma, VB Bajic, Z Zhang - RNA biology, 2013 - Taylor & Francis
Long non-coding RNAs (lncRNAs) have been found to perform various functions in a wide
variety of important biological processes. To make easier interpretation of lncRNA …

Deep learning in LncRNAome: contribution, challenges, and perspectives

T Alam, HRH Al-Absi, S Schmeier - Non-coding RNA, 2020 - mdpi.com
Long non-coding RNAs (lncRNA), the pervasively transcribed part of the mammalian
genome, have played a significant role in changing our protein-centric view of genomes …

Approaches for Modes of Action Study of Long Non-Coding RNAs: From Single Verification to Genome-Wide Determination

X Tao, S Li, G Chen, J Wang, S Xu - International Journal of Molecular …, 2023 - mdpi.com
Long non-coding RNAs (lncRNAs) are transcripts longer than 200 nucleotides (nt) that are
not translated into known functional proteins. This broad definition covers a large collection …

[HTML][HTML] Exploring the landscape of tools and resources for the analysis of long non-coding RNAs

M Ballarino, G Pepe, M Helmer-Citterich… - Computational and …, 2023 - Elsevier
In recent years, research on long non-coding RNAs (lncRNAs) has gained considerable
attention due to the increasing number of newly identified transcripts. Several characteristics …

Linc2function: A Comprehensive Pipeline and Webserver for Long Non-Coding RNA (lncRNA) Identification and Functional Predictions Using Deep Learning …

Y Ramakrishnaiah, AP Morris, J Dhaliwal, M Philip… - Epigenomes, 2023 - mdpi.com
Long non-coding RNAs (lncRNAs), comprising a significant portion of the human
transcriptome, serve as vital regulators of cellular processes and potential disease …

Hidden regulators: the emerging roles of lncRNAs in brain development and disease

F Alammari, EM Al-Hujaily, A Alshareeda… - Frontiers in …, 2024 - frontiersin.org
Long non-coding RNAs (lncRNAs) have emerged as critical players in brain development
and disease. These non-coding transcripts, which once considered as “transcriptional junk,” …

Molecular mechanisms of long noncoding RNAs

KC Wang, HY Chang - Molecular cell, 2011 - cell.com
Long noncoding RNAs (lncRNAs) are an important class of pervasive genes involved in a
variety of biological functions. Here we discuss the emerging archetypes of molecular …

Signaling by LncRNAs: Structure, cellular homeostasis, and disease pathology

R Nadhan, C Isidoro, YS Song, DN Dhanasekaran - Cells, 2022 - mdpi.com
The cellular signaling network involves co-ordinated regulation of numerous signaling
molecules that aid the maintenance of cellular as well as organismal homeostasis. Aberrant …