tomviz: providing advanced electron tomography by streamlining alignment, reconstruction, and 3D visualization

Y Jiang, E Padgett, MD Hanwell… - Microscopy and …, 2017 - cambridge.org
Electron tomography (ET) is widely used for 3D characterization of biological and material
systems at nano-scales and meso-scales [1, 2]. The success of an ET experiment critically …

Advanced platform for 3D visualization, reconstruction, and segmentation with electron tomography

Y Jiang, MD Hanwell, E Padgett, S Waldon… - Microscopy and …, 2016 - cambridge.org
Three-dimensional (3D) characterization of materials at the nano-and meso-scale has
become possible with electron tomography (ET)[1-2]. The typical workflow consists of raw …

3D reconstruction of biological structures: automated procedures for alignment and reconstruction of multiple tilt series in electron tomography

S Phan, D Boassa, P Nguyen, X Wan, J Lanman… - Advanced structural and …, 2016 - Springer
Transmission electron microscopy allows the collection of multiple views of specimens and
their computerized three-dimensional reconstruction and analysis with electron tomography …

[PDF][PDF] An introduction to low dose electron tomography-from specimen preparation to data collection

G Owen, DL Stokes - Modern Research and Educational Topics in …, 2007 - researchgate.net
Electron tomography is a technique that uses a Transmission Electron Microscope (TEM) to
determine a three-dimensional (3D) structure from any given asymmetric object [1]. This …

The ASTRA Toolbox: A platform for advanced algorithm development in electron tomography

W Van Aarle, WJ Palenstijn, J De Beenhouwer… - Ultramicroscopy, 2015 - Elsevier
We present the ASTRA Toolbox as an open platform for 3D image reconstruction in
tomography. Most of the software tools that are currently used in electron tomography offer …

TOM software toolbox: acquisition and analysis for electron tomography

S Nickell, F Förster, A Linaroudis, W Del Net… - Journal of structural …, 2005 - Elsevier
Automated data acquisition procedures have changed the perspectives of electron
tomography (ET) in a profound manner. Elaborate data acquisition schemes with autotuning …

A Novel Method of Data Collection for Automated Electron Tomography Based upon Pre-cal1bration of Image Shifts and Defocus Changes

U Ziese, R Janssen, W Geerts… - Microscopy and …, 2001 - cambridge.org
Electron tomography is a three-dimensional (3D) imaging method with transmission electron
microscopy (TEM) that provides high-resolution 3D images of structural arrangements. with …

Automated high‐throughput electron tomography by pre‐calibration of image shifts

U Ziese, AH Janssen, JL Murk, WJC Geerts… - Journal of …, 2002 - Wiley Online Library
Electron tomography is a versatile method for obtaining three‐dimensional (3D) images with
transmission electron microscopy. The technique is suitable to investigate cell organelles …

Automated procedures for the alignment and reconstruction of multiple tilt electron microscopic tomography data

MH Ellisman, D Boassa, P Nguyen, X Wan… - Microscopy and …, 2014 - cambridge.org
Transmission electron microscopy, combined with tomographic techniques, has been used
for decades to generate 3D representations of biological structures, with resolutions down to …

AutoGDeterm: automatic geometry determination for electron tomography

Y Chen, Z Wang, L Li, J Zhang, X Wan… - Tsinghua Science …, 2018 - ieeexplore.ieee.org
Electron Tomography (ET) is an important method for studying cell ultrastructure in three-
dimensional (3D) space. By combining cryo-electron tomography of frozen-hydrated …