Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)

T Gabrieli, H Sharim, D Fridman, N Arbib… - Nucleic acids …, 2018 - academic.oup.com
Next generation sequencing (NGS) is challenged by structural and copy number variations
larger than the typical read length of several hundred bases. Third-generation sequencing …

Targeted nanopore sequencing with Cas9-guided adapter ligation

T Gilpatrick, I Lee, JE Graham, E Raimondeau… - Nature …, 2020 - nature.com
Despite recent improvements in sequencing methods, there remains a need for assays that
provide high sequencing depth and comprehensive variant detection. Current methods …

Targeted nanopore sequencing with Cas9 for studies of methylation, structural variants, and mutations

T Gilpatrick, I Lee, JE Graham, E Raimondeau… - BioRxiv, 2019 - biorxiv.org
Nanopore sequencing technology can rapidly and directly interrogate native DNA
molecules. Often we are interested only in interrogating specific areas at high depth, but …

Nanopore adaptive sequencing for mixed samples, whole exome capture and targeted panels

A Payne, N Holmes, T Clarke, R Munro, B Debebe… - BioRxiv, 2020 - biorxiv.org
Nanopore sequencers enable selective sequencing of single molecules in real time by
individually reversing the voltage across specific nanopores. Thus DNA molecules can be …

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

A Payne, N Holmes, T Clarke, R Munro… - Nature …, 2021 - nature.com
Nanopore sequencers can be used to selectively sequence certain DNA molecules in a pool
by reversing the voltage across individual nanopores to reject specific sequences, enabling …

Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in …

K Geng, LG Merino, L Wedemann, A Martens… - Genome …, 2022 - genome.cshlp.org
The CRISPR-Cas9 system is widely used to permanently delete genomic regions via dual
guide RNAs. Genomic rearrangements induced by CRISPR-Cas9 can occur, but continuous …

Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA

R Volden, T Palmer, A Byrne, C Cole… - Proceedings of the …, 2018 - National Acad Sciences
High-throughput short-read sequencing has revolutionized how transcriptomes are
quantified and annotated. However, while Illumina short-read sequencers can be used to …

[HTML][HTML] Robust long-read native DNA sequencing using the ONT CsgG Nanopore system

JM Carter, S Hussain - Wellcome open research, 2017 - ncbi.nlm.nih.gov
Background: The ability to obtain long read lengths during DNA sequencing has several
potentially important practical applications. Especially long read lengths have been reported …

CaBagE: A Ca s9-based Ba ck g round E limination strategy for targeted, long-read DNA sequencing

AD Wallace, TA Sasani, J Swanier, BL Gates… - PLoS …, 2021 - journals.plos.org
A substantial fraction of the human genome is difficult to interrogate with short-read DNA
sequencing technologies due to paralogy, complex haplotype structures, or tandem repeats …

[HTML][HTML] Benchmarking of Nanopore R10. 4 and R9. 4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing

Y Ni, X Liu, ZM Simeneh, M Yang, R Li - Computational and Structural …, 2023 - Elsevier
Third-generation sequencing can be used in human cancer genomics and epigenomic
research. Oxford Nanopore Technologies (ONT) recently released R10. 4 flow cell, which …