Single-cell genomic and transcriptomic landscapes of primary and metastatic colorectal cancer tumors

R Wang, J Li, X Zhou, Y Mao, W Wang, S Gao… - Genome Medicine, 2022 - Springer
Background Colorectal cancer (CRC) ranks as the second-leading cause of cancer-related
death worldwide with metastases being the main cause of cancer-related death. Here, we …

Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells

JR Li, CH Sun, W Li, RF Chao, CC Huang… - Nucleic acids …, 2016 - academic.oup.com
The genome-wide transcriptome profiling of cancerous and normal tissue samples can
provide insights into the molecular mechanisms of cancer initiation and progression. RNA …

Identifying transcriptional programs underlying cancer drug response with TraCe-seq

MT Chang, F Shanahan, TTT Nguyen, ST Staben… - Nature …, 2022 - nature.com
Genetic and non-genetic heterogeneity within cancer cell populations represent major
challenges to anticancer therapies. We currently lack robust methods to determine how …

Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future

D Akhoundova, MA Rubin - Cancer Cell, 2022 - cell.com
Next-generation DNA sequencing technology has dramatically advanced clinical oncology
through the identification of therapeutic targets and molecular biomarkers, leading to the …

Molecular profiling for precision cancer therapies

ER Malone, M Oliva, PJB Sabatini, TL Stockley… - Genome medicine, 2020 - Springer
The number of druggable tumor-specific molecular aberrations has grown substantially in
the past decade, with a significant survival benefit obtained from biomarker matching …

Applications of single-cell RNA sequencing in drug discovery and development

B Van de Sande, JS Lee, E Mutasa-Gottgens… - Nature Reviews Drug …, 2023 - nature.com
Single-cell technologies, particularly single-cell RNA sequencing (scRNA-seq) methods,
together with associated computational tools and the growing availability of public data …

Advancing cancer research and medicine with single-cell genomics

B Lim, Y Lin, N Navin - Cancer cell, 2020 - cell.com
Single-cell sequencing (SCS) has impacted many areas of cancer research and improved
our understanding of intratumor heterogeneity, the tumor microenvironment, metastasis, and …

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

CH O'Flanagan, KR Campbell, AW Zhang, F Kabeer… - Genome biology, 2019 - Springer
Background Single-cell RNA sequencing (scRNA-seq) is a powerful tool for studying
complex biological systems, such as tumor heterogeneity and tissue microenvironments …

Implementing genome-driven oncology

DM Hyman, BS Taylor, J Baselga - Cell, 2017 - cell.com
Early successes in identifying and targeting individual oncogenic drivers, together with the
increasing feasibility of sequencing tumor genomes, have brought forth the promise of …

Tumor-agnostic treatment for cancer: when how is better than where

D Lavacchi, G Roviello, A D'Angelo - Clinical drug investigation, 2020 - Springer
In the evolving landscape of precision oncology, genomic characterization of tumor has
become crucial in order to move toward a molecular-based therapy for the vast majority of …