Decoupling resource-coupled gene expression in living cells

T Shopera, L He, T Oyetunde, YJ Tang… - ACS synthetic …, 2017 - ACS Publications
Synthetic biology aspires to develop frameworks that enable the construction of complex
and reliable gene networks with predictable functionalities. A key limitation is that increasing …

Resource competition shapes the response of genetic circuits

Y Qian, HH Huang, JI Jiménez… - ACS synthetic …, 2017 - ACS Publications
A common approach to design genetic circuits is to compose gene expression cassettes
together. While appealing, this modular approach is challenged by the fact that expression …

[HTML][HTML] Context-dependent redesign of robust synthetic gene circuits

A Stone, A Youssef, S Rijal, R Zhang, XJ Tian - Trends in Biotechnology, 2024 - cell.com
Cells provide dynamic platforms for executing exogenous genetic programs in synthetic
biology, resulting in highly context-dependent circuit performance. Recent years have seen …

Customizing cellular signal processing by synthetic multi-level regulatory circuits

Y Gao, L Wang, B Wang - Nature Communications, 2023 - nature.com
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …

An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells

RD Jones, Y Qian, V Siciliano, B DiAndreth… - Nature …, 2020 - nature.com
Synthetic biology has the potential to bring forth advanced genetic devices for applications
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …

Expression optimization and synthetic gene networks in cell-free systems

DK Karig, S Iyer, ML Simpson… - Nucleic acids …, 2012 - academic.oup.com
Synthetic biology offers great promise to a variety of applications through the forward
engineering of biological function. Most efforts in this field have focused on employing living …

Understanding biological regulation through synthetic biology

CJ Bashor, JJ Collins - Annual review of biophysics, 2018 - annualreviews.org
Engineering synthetic gene regulatory circuits proceeds through iterative cycles of design,
building, and testing. Initial circuit designs must rely on often-incomplete models of …

Orthogonality and Burdens of Heterologous AND Gate Gene Circuits in E. coli

Q Liu, J Schumacher, X Wan, C Lou… - ACS synthetic …, 2018 - ACS Publications
Synthetic biology approaches commonly introduce heterologous gene networks into a host
to predictably program cells, with the expectation of the synthetic network being orthogonal …

Circuit-host coupling induces multifaceted behavioral modulations of a gene switch

AE Blanchard, C Liao, T Lu - Biophysical journal, 2018 - cell.com
Quantitative modeling of gene circuits is fundamentally important to synthetic biology, as it
offers the potential to transform circuit engineering from trial-and-error construction to …

Transferring a synthetic gene circuit from yeast to mammalian cells

D Nevozhay, T Zal, G Balázsi - Nature communications, 2013 - nature.com
The emerging field of synthetic biology builds gene circuits for scientific, industrial and
therapeutic needs. Adaptability of synthetic gene circuits across different organisms could …