NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology
Background Next Generation Sequencing (NGS) techniques dominate today's landscape of
genetics and genomics research. Though Illumina still dominates worldwide sequencing …
genetics and genomics research. Though Illumina still dominates worldwide sequencing …
An educational guide for nanopore sequencing in the classroom
AN Salazar, FL Nobrega, C Anyansi… - PLoS computational …, 2020 - journals.plos.org
The last decade has witnessed a remarkable increase in our ability to measure genetic
information. Advancements of sequencing technologies are challenging the existing …
information. Advancements of sequencing technologies are challenging the existing …
Evaluation of Oxford Nanopore's MinION sequencing device for microbial whole genome sequencing applications
AD Tyler, L Mataseje, CJ Urfano, L Schmidt… - Scientific reports, 2018 - nature.com
Abstract The MinION sequencer (Oxford Nanopore Technologies) is a paradigm shifting
device allowing rapid, real time long read sequencing of nucleic acids. Yet external …
device allowing rapid, real time long read sequencing of nucleic acids. Yet external …
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
W de Koning, M Miladi, S Hiltemann, A Heikema… - …, 2020 - academic.oup.com
Background Long-read sequencing can be applied to generate very long contigs and even
completely assembled genomes at relatively low cost and with minimal sample preparation …
completely assembled genomes at relatively low cost and with minimal sample preparation …
Nanocall: an open source basecaller for Oxford Nanopore sequencing data
Abstract Motivation The highly portable Oxford Nanopore MinION sequencer has enabled
new applications of genome sequencing directly in the field. However, the MinION currently …
new applications of genome sequencing directly in the field. However, the MinION currently …
A comparison of Oxford nanopore library strategies for bacterial genomics
Abstract Background Oxford nanopore Technologies (ONT) provides three main library
preparation strategies to sequence bacterial genomes. These include tagmentation (TAG) …
preparation strategies to sequence bacterial genomes. These include tagmentation (TAG) …
Comparative evaluation of Nanopore polishing tools for microbial genome assembly and polishing strategies for downstream analysis
JY Lee, M Kong, J Oh, JS Lim, SH Chung, JM Kim… - Scientific Reports, 2021 - nature.com
Assembling high-quality microbial genomes using only cost-effective Nanopore long-read
systems such as Flongle is important to accelerate research on the microbial genome and …
systems such as Flongle is important to accelerate research on the microbial genome and …
Oxford Nanopore R10. 4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or …
Abstract Long-read Oxford Nanopore sequencing has democratized microbial genome
sequencing and enables the recovery of highly contiguous microbial genomes from isolates …
sequencing and enables the recovery of highly contiguous microbial genomes from isolates …
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction
Abstract Background Oxford Nanopore Technology (ONT) long-read sequencing has
become a popular platform for microbial researchers due to the accessibility and affordability …
become a popular platform for microbial researchers due to the accessibility and affordability …
[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities
L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …
microbial samples through the possibility to sequence long reads in real time using …