Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies

MG Kersloot, FJP van Putten, A Abu-Hanna… - Journal of biomedical …, 2020 - Springer
Background Free-text descriptions in electronic health records (EHRs) can be of interest for
clinical research and care optimization. However, free text cannot be readily interpreted by a …

Natural language processing systems for capturing and standardizing unstructured clinical information: a systematic review

K Kreimeyer, M Foster, A Pandey, N Arya… - Journal of biomedical …, 2017 - Elsevier
We followed a systematic approach based on the Preferred Reporting Items for Systematic
Reviews and Meta-Analyses to identify existing clinical natural language processing (NLP) …

Clinical natural language processing in 2014: foundational methods supporting efficient healthcare

A Névéol, P Zweigenbaum - Yearbook of Medical Informatics, 2015 - thieme-connect.com
Objective: To summarize recent research and present a selection of the best papers
published in 2014 in the field of clinical Natural Language Processing (NLP). Method: A …

Recent advances in clinical natural language processing in support of semantic analysis

S Velupillai, D Mowery, BR South… - Yearbook of medical …, 2015 - thieme-connect.com
Objectives: We present a review of recent advances in clinical Natural Language Processing
(NLP), with a focus on semantic analysis and key subtasks that support such analysis …

[HTML][HTML] Automatically detecting failures in natural language processing tools for online community text

A Park, AL Hartzler, J Huh, DW McDonald… - Journal of medical …, 2015 - jmir.org
Background: The prevalence and value of patient-generated health text are increasing, but
processing such text remains problematic. Although existing biomedical natural language …

[HTML][HTML] A frame semantic overview of NLP-based information extraction for cancer-related EHR notes

S Datta, EV Bernstam, K Roberts - Journal of biomedical informatics, 2019 - Elsevier
Objective There is a lot of information about cancer in Electronic Health Record (EHR) notes
that can be useful for biomedical research provided natural language processing (NLP) …

[HTML][HTML] Use of the systematized nomenclature of medicine clinical terms (SNOMED CT) for processing free text in health care: systematic scoping review

C Gaudet-Blavignac, V Foufi, M Bjelogrlic… - Journal of medical …, 2021 - jmir.org
Background: Interoperability and secondary use of data is a challenge in health care.
Specifically, the reuse of clinical free text remains an unresolved problem. The Systematized …

[HTML][HTML] Natural language processing methods and systems for biomedical ontology learning

K Liu, WR Hogan, RS Crowley - Journal of biomedical informatics, 2011 - Elsevier
While the biomedical informatics community widely acknowledges the utility of domain
ontologies, there remain many barriers to their effective use. One important requirement of …

Clinical natural language processing in languages other than English: opportunities and challenges

A Névéol, H Dalianis, S Velupillai, G Savova… - Journal of biomedical …, 2018 - Springer
Background Natural language processing applied to clinical text or aimed at a clinical
outcome has been thriving in recent years. This paper offers the first broad overview of …

[HTML][HTML] Natural language processing to extract medical problems from electronic clinical documents: performance evaluation

S Meystre, PJ Haug - Journal of biomedical informatics, 2006 - Elsevier
In this study, we evaluate the performance of a Natural Language Processing (NLP)
application designed to extract medical problems from narrative text clinical documents. The …