Convolutional Neural Networks: A Promising Deep Learning Architecture for Biological Sequence Analysis

C John, J Sahoo, M Madhavan… - Current …, 2023 - ingentaconnect.com
The deep learning arena explores new dimensions once considered impossible to human
intelligence. Recently, it has taken footsteps in the biological data world to deal with the …

SECLAF: a webserver and deep neural network design tool for hierarchical biological sequence classification

B Szalkai, V Grolmusz - Bioinformatics, 2018 - academic.oup.com
Artificial intelligence tools are gaining more and more ground each year in bioinformatics.
Learning algorithms can be taught for specific tasks by using the existing enormous …

Pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks

S Budach, A Marsico - Bioinformatics, 2018 - academic.oup.com
Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a
variety of tasks, including biological sequence classification. Available implementations …

autoBioSeqpy: a deep learning tool for the classification of biological sequences

R Jing, Y Li, L Xue, F Liu, M Li… - Journal of Chemical …, 2020 - ACS Publications
Deep learning has proven to be a powerful method with applications in various fields
including image, language, and biomedical data. Thanks to the libraries and toolkits such as …

Protein sequence classification using convolutional neural network and natural language processing

A Pandey, SS Roy - Handbook of Machine Learning Applications for …, 2022 - Springer
Classifying protein sequences from biological data has lot of importance in the field of
pharmacology. The application of machine learning to find the sequence of amino acids has …

[HTML][HTML] Artificial intelligence used in genome analysis studies

E D'Agaro - The EuroBiotech Journal, 2018 - sciendo.com
Abstract Next Generation Sequencing (NGS) or deep sequencing technology enables
parallel reading of multiple individual DNA fragments, thereby enabling the identification of …

[HTML][HTML] Machine learning for biological sequence analysis

Z Lv, M Li, Y Wang, Q Zou - Frontiers in Genetics, 2023 - frontiersin.org
Biomacromolecules, primarily proteins, DNA, and RNA, are crucial for vital physiological
processes. Biomacromolecules can generally be represented by sequences, comprising …

Classification of Sequences with Deep Artificial Neural Networks: Representation and Architectural Issues

D Amato, MAD Gangi, A Fiannaca, LL Paglia… - Deep Learning for …, 2021 - Springer
DNA sequences are the basic data type that is processed to perform a generic study of
biological data analysis. One key component of the biological analysis is represented by …

[HTML][HTML] BioS2Net: Holistic Structural and Sequential Analysis of Biomolecules Using a Deep Neural Network

A Roethel, P Biliński, T Ishikawa - International Journal of Molecular …, 2022 - mdpi.com
Background: For decades, the rate of solving new biomolecular structures has been
exceeding that at which their manual classification and feature characterisation can be …

DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis

R Wang, Y Jiang, J Jin, C Yin, H Yu… - Nucleic acids …, 2023 - academic.oup.com
Here, we present DeepBIO, the first-of-its-kind automated and interpretable deep-learning
platform for high-throughput biological sequence functional analysis. DeepBIO is a one-stop …