[HTML][HTML] Genomic methods in profiling DNA accessibility and factor localization

DC Klein, SJ Hainer - Chromosome Research, 2020 - Springer
Recent advancements in next-generation sequencing technologies and accompanying
reductions in cost have led to an explosion of techniques to examine DNA accessibility and …

[HTML][HTML] Chromatin accessibility: a window into the genome

M Tsompana, MJ Buck - Epigenetics & chromatin, 2014 - Springer
Transcriptional activation throughout the eukaryotic lineage has been tightly linked with
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …

Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation

RV Chereji, PR Eriksson, J Ocampo… - Genome …, 2019 - genome.cshlp.org
DNA accessibility is thought to be of major importance in regulating gene expression. We
test this hypothesis using a restriction enzyme as a probe of chromatin structure and as a …

Chromatin accessibility: methods, mechanisms, and biological insights

AR Mansisidor, VI Risca - Nucleus, 2022 - Taylor & Francis
Access to DNA is a prerequisite to the execution of essential cellular processes that include
transcription, replication, chromosomal segregation, and DNA repair. How the proteins that …

[HTML][HTML] Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay

BC Sos, HL Fung, DR Gao, TF Osothprarop, A Kia… - Genome biology, 2016 - Springer
Chromatin accessibility captures in vivo protein-chromosome binding status, and is
considered an informative proxy for protein-DNA interactions. DNase I and Tn5 transposase …

[HTML][HTML] Proximity labeling techniques to study chromatin

H Ummethum, S Hamperl - Frontiers in Genetics, 2020 - frontiersin.org
Mammals contain over 200 different cell types, yet nearly all have the same genomic DNA
sequence. It is a key question in biology how the genetic instructions in DNA are selectively …

Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

S Pott - elife, 2017 - elifesciences.org
Gaining insights into the regulatory mechanisms that underlie the transcriptional variation
observed between individual cells necessitates the development of methods that measure …

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

A Kundaje, S Kyriazopoulou-Panagiotopoulou… - Genome …, 2012 - genome.cshlp.org
Gene regulation at functional elements (eg, enhancers, promoters, insulators) is governed
by an interplay of nucleosome remodeling, histone modifications, and transcription factor …

Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …