Pseudogenes in plasmid genomes reveal past transitions in plasmid mobility

DM Hanke, Y Wang, T Dagan - Nucleic Acids Research, 2024 - academic.oup.com
Evidence for gene non-functionalization due to mutational processes is found in genomes in
the form of pseudogenes. Pseudogenes are known to be rare in prokaryote chromosomes …

Towards solving the conundrum of plasmid mobility: networks of functional dependencies shape plasmid transfer

M Ares-Arroyo, C Coluzzi, EPC Rocha - bioRxiv, 2022 - biorxiv.org
Plasmids are key drivers of bacterial evolution by transferring genes between cells via
conjugation. Yet, half of the plasmids lack all protein coding genes for this process. We …

Evolution of plasmid mobility: origin and fate of conjugative and nonconjugative plasmids

C Coluzzi, MP Garcillán-Barcia… - Molecular Biology …, 2022 - academic.oup.com
Conjugation drives the horizontal transfer of adaptive traits across prokaryotes. One-fourth of
the plasmids encode the functions necessary to conjugate autonomously, the others being …

Mobility of plasmids

C Smillie, MP Garcillán-Barcia… - Microbiology and …, 2010 - Am Soc Microbiol
Plasmids are key vectors of horizontal gene transfer and essential genetic engineering tools.
They code for genes involved in many aspects of microbial biology, including detoxication …

Expanding the diversity of origin of transfer-containing sequences in mobilizable plasmids

M Ares-Arroyo, A Nucci, EPC Rocha - Nature Microbiology, 2024 - nature.com
Conjugative plasmids are important drivers of bacterial evolution. Most plasmids lack genes
for conjugation and characterized origins of transfer (oriT), which has hampered our …

[HTML][HTML] An evolutionary perspective on plasmid lifestyle modes

N Hülter, J Ilhan, T Wein, AS Kadibalban… - Current opinion in …, 2017 - Elsevier
Highlights•Plasmid evolution reviewed from the perspective of plasmids.•Mobility, stability,
and indispensability largely determine plasmid lifestyles.•Changes in plasmid traits facilitate …

Plasmid carriage can limit bacteria–phage coevolution

E Harrison, J Truman, R Wright, AJ Spiers… - Biology …, 2015 - royalsocietypublishing.org
Coevolution with bacteriophages is a major selective force shaping bacterial populations
and communities. A variety of both environmental and genetic factors has been shown to …

Identification of bacterial plasmids based on mobility and plasmid population biology

MP Garcillán-Barcia, A Alvarado… - FEMS microbiology …, 2011 - academic.oup.com
Plasmids contain a backbone of core genes that remains relatively stable for long
evolutionary periods, making sense to speak about plasmid species. The identification and …

Segregational drift constrains the evolutionary rate of prokaryotic plasmids

A Garoña, NF Hülter, D Romero Picazo… - Molecular Biology and …, 2021 - academic.oup.com
Plasmids are extrachromosomal genetic elements in prokaryotes that have been recognized
as important drivers of microbial ecology and evolution. Plasmids are found in multiple …

Fundamental parameters governing the transmission of conjugative plasmids

J Rodriguez-Grande, M del Pilar Garcillan, F de la Cruz… - bioRxiv, 2023 - biorxiv.org
Plasmid conjugation is a major route for the dissemination of antibiotic resistances and
adaptive genes among bacterial populations. Obtaining precise conjugation rates is thus …