COVID-19: disease pathways and gene expression changes predict methylprednisolone can improve outcome in severe cases

S Draghici, TM Nguyen, LA Sonna, C Ziraldo… - …, 2021 - academic.oup.com
Motivation COVID-19 has several distinct clinical phases: a viral replication phase, an
inflammatory phase and in some patients, a hyper-inflammatory phase. High mortality is …

Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2

F Li, AP Michelson, R Foraker, M Zhan… - BMC medical informatics …, 2021 - Springer
Abstract Background The Coronavirus Disease 2019 (COVID-19) pandemic has infected
over 10 million people globally with a relatively high mortality rate. There are many …

Bioinformatics and system biology approach to identify the influences among COVID-19, ARDS and sepsis

P Li, T Li, Z Zhang, X Dai, B Zeng, Z Li, Z Li - Frontiers in Immunology, 2023 - frontiersin.org
Background Severe coronavirus disease 2019 (COVID-19) has led to severe pneumonia or
acute respiratory distress syndrome (ARDS) worldwide. we have noted that many critically ill …

Inferring molecular mechanisms of dexamethasone therapy in severe COVID-19 from existing transcriptomic data

A Sharma - Gene, 2021 - Elsevier
Dexamethasone, a synthetic glucocorticoid, has previously shown mortality benefit in severe
coronavirus disease 2019 (COVID-19) in a randomized controlled trial. As the illness is …

An in silico analysis identifies drugs potentially modulating the cytokine storm triggered by SARS-CoV-2 infection

L Sanchez-Burgos, G Gómez-López, F Al-Shahrour… - Scientific Reports, 2022 - nature.com
The ongoing COVID-19 pandemic is one of the biggest health challenges of recent decades.
Among the causes of mortality triggered by SARS-CoV-2 infection, the development of an …

Integrative transcriptomics analysis of lung epithelial cells and identification of repurposable drug candidates for COVID-19

T Islam, MR Rahman, B Aydin, H Beklen… - European Journal of …, 2020 - Elsevier
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) disease, more commonly
COVID-19 has emerged as a world health pandemic. There are couples of treatment …

Gene expression profiling of SARS-CoV-2 infections reveal distinct primary lung cell and systemic immune infection responses that identify pathways relevant in …

MA Moni, JMW Quinn, N Sinmaz… - Briefings in …, 2021 - academic.oup.com
To identify key gene expression pathways altered with infection of the novel coronavirus
SARS-CoV-2, we performed the largest comparative genomic and transcriptomic analysis to …

A closer look at dexamethasone and the SARS-CoV-2-induced cytokine storm: in silico insights of the first life-saving COVID-19 drug

P Morgan, SJ Arnold, NW Hsiao, CW Shu - Antibiotics, 2021 - mdpi.com
The term cytokine storm refers to an uncontrolled overproduction of soluble inflammatory
markers known as cytokines and chemokines. Autoimmune destruction of the lungs …

Leveraging systems biology for predicting modulators of inflammation in patients with COVID-19

S Jung, I Potapov, S Chillara, A Del Sol - Science Advances, 2021 - science.org
Dysregulations in the inflammatory response of the body to pathogens could progress
toward a hyperinflammatory condition amplified by positive feedback loops and associated …

Prediction of SARS-CoV-2 Infection Phosphorylation Sites and Associations of these Modifications with Lung Cancer Development

W Li, G Li, Y Sun, L Zhang, X Cui, Y Jia… - Current Gene …, 2024 - ingentaconnect.com
Introduction: Since the emergence of SARS-CoV-2 viruses, multiple mutant strains have
been identified. Infection with SARS-CoV-2 virus leads to alterations in host cell …