Recent advances in clinical natural language processing in support of semantic analysis

S Velupillai, D Mowery, BR South… - Yearbook of medical …, 2015 - thieme-connect.com
Objectives: We present a review of recent advances in clinical Natural Language Processing
(NLP), with a focus on semantic analysis and key subtasks that support such analysis …

BioOntoVerb: A top level ontology based framework to populate biomedical ontologies from texts

JM Ruiz-Martínez, R Valencia-García… - Knowledge-Based …, 2012 - Elsevier
The Semantic Web can be conceived as an extension of the current Web where information
is given well-defined meaning. In this scenario ontologies are crucial since they provide …

Semantic annotation in biomedicine: the current landscape

J Jovanović, E Bagheri - Journal of biomedical semantics, 2017 - Springer
The abundance and unstructured nature of biomedical texts, be it clinical or research
content, impose significant challenges for the effective and efficient use of information and …

[HTML][HTML] Querying semantic catalogues of biomedical databases

A Pereira, JR Almeida, RP Lopes, JL Oliveira - Journal of Biomedical …, 2023 - Elsevier
Background Secondary use of health data is a valuable source of knowledge that boosts
observational studies, leading to important discoveries in the medical and biomedical …

Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+

A Tchechmedjiev, A Abdaoui, V Emonet, S Melzi… - …, 2018 - academic.oup.com
Second use of clinical data commonly involves annotating biomedical text with
terminologies and ontologies. The National Center for Biomedical Ontology Annotator is a …

Building a biomedical ontology recommender web service

C Jonquet, MA Musen, NH Shah - Journal of biomedical semantics, 2010 - Springer
Background Researchers in biomedical informatics use ontologies and terminologies to
annotate their data in order to facilitate data integration and translational discoveries. As the …

[PDF][PDF] Knowledge Zone: a public repository of peer-reviewed biomedical ontologies

K Supekar, D Rubin, N Noy… - Studies in health …, 2007 - ndl.ethernet.edu.et
Reuse of ontologies is important for achieving better interoperability among health systems
and relieving knowledge engineers from the burden of developing ontologies from scratch …

Biomedical ontologies in action: role in knowledge management, data integration and decision support

O Bodenreider - Yearbook of medical informatics, 2008 - thieme-connect.com
Objectives To provide typical examples of biomedical ontologies in action, emphasizing the
role played by biomedical ontologies in knowledge management, data integration and …

Making biomedical ontologies and ontology repositories work

NF Noy, DL Rubin, MA Musen - IEEE Intelligent Systems, 2004 - ieeexplore.ieee.org
It is becoming impossible to contemplate successful bio-medical research without canonical
data structures. The biomedical computation community finds itself grappling with hundreds …

[PDF][PDF] Experiences Using Semantic Web Technologies to Realize an Information Retrieval System for Pathology.

EP Bontas, S Tietz, T Schrader - Berliner XML Tage, 2004 - researchgate.net
Building the Semantic Web requires the use of powerful tools to create, manage and extend
domain ontologies represented with Semantic Web languages. Though many tools have …