[HTML][HTML] An open annotation ontology for science on web 3.0

P Ciccarese, M Ocana, LJ Garcia Castro, S Das… - Journal of biomedical …, 2011 - Springer
Background There is currently a gap between the rich and expressive collection of
published biomedical ontologies, and the natural language expression of biomedical papers …

Ontology driven semantic profiling and retrieval in medical information systems

M Bhatt, W Rahayu, SP Soni, C Wouters - Journal of Web semantics, 2009 - Elsevier
We propose the application of a novel sub-ontology extraction methodology for achieving
interoperability and improving the semantic validity of information retrieval in the medical …

[HTML][HTML] As ontologies reach maturity, artificial intelligence starts being fully efficient: findings from the section on knowledge representation and management for the …

F Dhombres, J Charlet - Yearbook of medical informatics, 2018 - thieme-connect.com
Objectives: To select, present, and summarize the best papers published in 2017 in the field
of Knowledge Representation and Management (KRM). Methods: A comprehensive and …

Life science ontologies in literature retrieval: a comparison of linked data sets for use in semantic search on a heterogeneous corpus

B Müller, A Hagelstein, T Gübitz - … : EKAW 2016 Satellite Events, EKM and …, 2017 - Springer
Ontologies are modeled using specific concepts of the knowledge domain as well as using
generic concepts. Life science ontologies like MeSH, Agrovoc, and DrugBank are helpful for …

From natural language descriptions in clinical guidelines to relationships in an ontology

M Taboada, M Meizoso, D Riaño, A Alonso… - … for Health-Care. Data …, 2010 - Springer
Abstract Knowledge Engineering allows to automate entity recognition and relation
extraction from clinical texts, which in turn can be used to facilitate clinical practice guideline …

A system for ontology-based annotation of biomedical data

C Jonquet, MA Musen, N Shah - Data Integration in the Life Sciences: 5th …, 2008 - Springer
We present a system for ontology based annotation and indexing of biomedical data; the key
functionality of this system is to provide a service that enables users to locate biomedical …

Semi-Automated Evaluation of Biomedical Ontologies for the Biobanking Domain Based on Competency Questions.

P Hofer, SB Neururer, H Hauffe, T Insam, A Zeilner… - eHealth, 2015 - books.google.com
Background: Biosample collections and biobank information systems have become a key
enabler for medical research. Therefore it is important to identify potentially relevant …

Information extraction from Italian medical reports: An ontology-driven approach

N Viani, C Larizza, V Tibollo, C Napolitano… - International journal of …, 2018 - Elsevier
Objective In this work, we propose an ontology-driven approach to identify events and their
attributes from episodes of care included in medical reports written in Italian. For this …

[HTML][HTML] RysannMD: a biomedical semantic annotator balancing speed and accuracy

J Cuzzola, J Jovanović, E Bagheri - Journal of Biomedical Informatics, 2017 - Elsevier
Recently, both researchers and practitioners have explored the possibility of semantically
annotating large and continuously evolving collections of biomedical texts such as research …

[HTML][HTML] The open biomedical annotator

C Jonquet, NH Shah, MA Musen - Summit on translational …, 2009 - ncbi.nlm.nih.gov
The range of publicly available biomedical data is enormous and is expanding fast. This
expansion means that researchers now face a hurdle to extracting the data they need from …