[HTML][HTML] High throughput nanopore sequencing of SARS-CoV-2 viral genomes from patient samples

AA Pater, MS Bosmeny, AA White… - Journal of biological …, 2021 - ncbi.nlm.nih.gov
In late 2019, a novel coronavirus began spreading in Wuhan, China, causing a potentially
lethal respiratory viral infection. By early 2020, the novel coronavirus, called SARS-CoV-2 …

Rapid genomic characterization of SARS-CoV-2 viruses from clinical specimens using nanopore sequencing

J Li, H Wang, L Mao, H Yu, X Yu, Z Sun, X Qian… - Scientific reports, 2020 - nature.com
The novel SARS-CoV-2 outbreak has swiftly spread worldwide. The rapid genome
sequencing of SARS-CoV-2 strains has become a helpful tool for better understanding the …

Simplified point-of-care full SARS-CoV-2 genome sequencing using nanopore technology

A Pembaur, E Sallard, PP Weil, J Ortelt… - Microorganisms, 2021 - mdpi.com
The scale of the ongoing SARS-CoV-2 pandemic warrants the urgent establishment of a
global decentralized surveillance system to recognize local outbreaks and the emergence of …

A rapid, whole genome sequencing assay for detection and characterization of novel coronavirus (SARS-CoV-2) clinical specimens using nanopore sequencing

MT Arévalo, MA Karavis, SE Katoski, JV Harris… - Frontiers in …, 2022 - frontiersin.org
A new human coronavirus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),
emerged at the end of 2019 in Wuhan, China that caused a range of disease severities; …

Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols

B Brejová, K Boršová, V Hodorová, V Čabanová… - PLoS …, 2021 - journals.plos.org
Surveillance of the SARS-CoV-2 variants including the quickly spreading mutants by rapid
and near real-time sequencing of the viral genome provides an important tool for effective …

Rapid acquisition of high-quality SARS-CoV-2 genome via Amplicon-Oxford nanopore sequencing

Y Yan, K Wu, J Chen, H Liu, Y Huang, Y Zhang… - Virologica Sinica, 2021 - Springer
Genome sequencing has shown strong capabilities in the initial stages of the COVID-19
pandemic such as pathogen identification and virus preliminary tracing. While the rapid …

[HTML][HTML] Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore

JR Tyson, P James, D Stoddart, N Sparks… - BioRxiv, 2020 - ncbi.nlm.nih.gov
Genome sequencing has been widely deployed to study the evolution of SARS-CoV-2 with
more than 90,000 genome sequences uploaded to the GISAID database. We published a …

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing

C Brandt, S Krautwurst, R Spott, M Lohde… - Frontiers in …, 2021 - frontiersin.org
In response to the SARS-CoV-2 pandemic, a highly increased sequencing effort has been
established worldwide to track and trace ongoing viral evolution. Technologies, such as …

SARS-CoV-2 genomes recovered by long amplicon tiling multiplex approach using nanopore sequencing and applicable to other sequencing platforms

PC Resende, FC Motta, S Roy, L Appolinario, A Fabri… - BioRxiv, 2020 - biorxiv.org
Genomic surveillance has become a useful tool for better understanding virus pathogenicity,
origin and spread. Obtaining accurately assembled, complete viral genomes directly from …

Sequencing of SARS-CoV-2 genome using different nanopore chemistries

O González-Recio, M Gutiérrez-Rivas… - Applied microbiology …, 2021 - Springer
Nanopore sequencing has emerged as a rapid and cost-efficient tool for diagnostic and
epidemiological surveillance of SARS-CoV-2 during the COVID-19 pandemic. This study …