Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning

TE Tavolara, MKK Niazi, M Ginese, C Piedra-Mora… - …, 2020 - thelancet.com
Background Identifying which individuals will develop tuberculosis (TB) remains an
unresolved problem due to few animal models and computational approaches that …

Deep learning predicts gene expression as an intermediate data modality to identify susceptibility patterns in Mycobacterium tuberculosis infected Diversity Outbred …

TE Tavolara, MKK Niazi, AC Gower, M Ginese… - …, 2021 - thelancet.com
Background Machine learning sustains successful application to many diagnostic and
prognostic problems in computational histopathology. Yet, few efforts have been made to …

Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice

MKK Niazi, N Dhulekar, D Schmidt… - Disease models & …, 2015 - journals.biologists.com
Pulmonary tuberculosis (TB) is caused by Mycobacterium tuberculosis in susceptible
humans. Here, we infected Diversity Outbred (DO) mice with∼ 100 bacilli by aerosol to …

Computational and Empirical Studies Predict Mycobacterium tuberculosis-Specific T Cells as a Biomarker for Infection Outcome

S Marino, HP Gideon, C Gong, S Mankad… - PLoS Computational …, 2016 - journals.plos.org
Identifying biomarkers for tuberculosis (TB) is an ongoing challenge in developing
immunological correlates of infection outcome and protection. Biomarker discovery is also …

[HTML][HTML] Tuberculosis conundrum-current and future scenarios: a proposed comprehensive approach combining laboratory, imaging, and computing advances

SA Merchant, MJS Shaikh… - World Journal of Radiology, 2022 - ncbi.nlm.nih.gov
Tuberculosis (TB) remains a global threat, with the rise of multiple and extensively drug
resistant TB posing additional challenges. The International health community has set …

Digital image analysis of heterogeneous tuberculosis pulmonary pathology in non-clinical animal models using deep convolutional neural networks

BC Asay, BB Edwards, J Andrews, ME Ramey… - Scientific reports, 2020 - nature.com
Efforts to develop effective and safe drugs for treatment of tuberculosis require preclinical
evaluation in animal models. Alongside efficacy testing of novel therapies, effects on …

Evolution of machine learning in tuberculosis diagnosis: a review of deep learning-based medical applications

M Singh, GV Pujar, SA Kumar, M Bhagyalalitha… - Electronics, 2022 - mdpi.com
Tuberculosis (TB) is an infectious disease that has been a major menace to human health
globally, causing millions of deaths yearly. Well-timed diagnosis and treatment are an arch …

Automatic detection of granuloma necrosis in pulmonary tuberculosis using a two-phase algorithm: 2D-TB

P Kus, MN Gurcan, G Beamer - Microorganisms, 2019 - mdpi.com
Granuloma necrosis occurs in hosts susceptible to pathogenic mycobacteria and is a
diagnostic visual feature of pulmonary tuberculosis (TB) in humans and in super-susceptible …

Prediction of Tuberculosis From Lung Tissue Images of Diversity Outbred Mice Using Jump Knowledge Based Cell Graph Neural Network

V Acharya, D Choi, B Yener, G Beamer - IEEE Access, 2024 - ieeexplore.ieee.org
Tuberculosis (TB), primarily affecting the lungs, is caused by the bacterium Mycobacterium
tuberculosis and poses a significant health risk. Detecting acid-fast bacilli (AFB) in stained …

[HTML][HTML] Refining dataset curation methods for deep learning-based automated tuberculosis screening

TK Kim, HY Paul, GD Hager, CT Lin - Journal of Thoracic Disease, 2020 - ncbi.nlm.nih.gov
Background The study objective was to determine whether unlabeled datasets can be used
to further train and improve the accuracy of a deep learning system (DLS) for the detection of …