Atlas-based segmentation of pathological MR brain images using a model of lesion growth

MB Cuadra, C Pollo, A Bardera… - IEEE transactions on …, 2004 - ieeexplore.ieee.org
We propose a method for brain atlas deformation in the presence of large space-occupying
tumors, based on an a priori model of lesion growth that assumes radial expansion of the …

Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context

PY Bondiau, G Malandain, S Chanalet… - International Journal of …, 2005 - Elsevier
PURPOSE: Brain tumor radiotherapy requires the volume measurements and the
localization of several individual brain structures. Any tool that can assist the physician to …

Atlas-based segmentation of brain tumor images using a Markov random field-based tumor growth model and non-rigid registration

S Bauer, C Seiler, T Bardyn… - … conference of the …, 2010 - ieeexplore.ieee.org
We propose a new and clinically oriented approach to perform atlas-based segmentation of
brain tumor images. A mesh-free method is used to model tumor-induced soft tissue …

Dense deformation field estimation for atlas-based segmentation of pathological MR brain images

MB Cuadra, M De Craene, V Duay, B Macq… - Computer methods and …, 2006 - Elsevier
Atlas registration is a recognized paradigm for the automatic segmentation of normal MR
brain images. Unfortunately, atlas-based segmentation has been of limited use in presence …

Multiscale modeling for image analysis of brain tumor studies

S Bauer, C May, D Dionysiou… - IEEE transactions on …, 2011 - ieeexplore.ieee.org
Image-based modeling of tumor growth combines methods from cancer simulation and
medical imaging. In this context, we present a novel approach to adapt a healthy brain atlas …

Joint segmentation and deformable registration of brain scans guided by a tumor growth model

A Gooya, KM Pohl, M Bilello, G Biros… - … Image Computing and …, 2011 - Springer
This paper presents an approach for joint segmentation and deformable registration of brain
scans of glioma patients to a normal atlas. The proposed method is based on the …

A review of atlas-based segmentation for magnetic resonance brain images

M Cabezas, A Oliver, X Lladó, J Freixenet… - Computer methods and …, 2011 - Elsevier
Normal and abnormal brains can be segmented by registering the target image with an
atlas. Here, an atlas is defined as the combination of an intensity image (template) and its …

ORBIT: A multiresolution framework for deformable registration of brain tumor images

EI Zacharaki, D Shen, SK Lee… - IEEE transactions on …, 2008 - ieeexplore.ieee.org
A deformable registration method is proposed for registering a normal brain atlas with
images of brain tumor patients. The registration is facilitated by first simulating the tumor …

GLISTR: glioma image segmentation and registration

A Gooya, KM Pohl, M Bilello, L Cirillo… - IEEE transactions on …, 2012 - ieeexplore.ieee.org
We present a generative approach for simultaneously registering a probabilistic atlas of a
healthy population to brain magnetic resonance (MR) scans showing glioma and …

Simulating deformations of MR brain images for validation of atlas-based segmentation and registration algorithms

Z Xue, D Shen, B Karacali, J Stern, D Rottenberg… - NeuroImage, 2006 - Elsevier
Simulated deformations and images can act as the gold standard for evaluating various
template-based image segmentation and registration algorithms. Traditional deformable …