Precise generation of systems biology models from KEGG pathways
Abstract Background The KEGG PATHWAY database provides a plethora of pathways for a
diversity of organisms. All pathway components are directly linked to other KEGG databases …
diversity of organisms. All pathway components are directly linked to other KEGG databases …
KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database
K Moutselos, I Kanaris, A Chatziioannou… - BMC …, 2009 - Springer
Abstract Background The KEGG Pathway database is a valuable collection of metabolic
pathway maps. Nevertheless, the production of simulation capable metabolic networks from …
pathway maps. Nevertheless, the production of simulation capable metabolic networks from …
Dynamic exploration and editing of KEGG pathway diagrams
C Klukas, F Schreiber - Bioinformatics, 2007 - academic.oup.com
Abstract Motivation: The Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway
database is a very valuable information resource for researchers in the fields of life sciences …
database is a very valuable information resource for researchers in the fields of life sciences …
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
The KEGG PATHWAY database provides a widely used service for metabolic and
nonmetabolic pathways. It contains manually drawn pathway maps with information about …
nonmetabolic pathways. It contains manually drawn pathway maps with information about …
Path2Models: large-scale generation of computational models from biochemical pathway maps
Background Systems biology projects and omics technologies have led to a growing
number of biochemical pathway models and reconstructions. However, the majority of these …
number of biochemical pathway models and reconstructions. However, the majority of these …
Efficient system wide metabolic pathway comparisons in multiple microbes using genome to KEGG orthology (G2KO) pipeline tool
Abstract Comparison of system-wide metabolic pathways among microbes provides
valuable insights of organisms' metabolic capabilities that can further assist in rationally …
valuable insights of organisms' metabolic capabilities that can further assist in rationally …
[HTML][HTML] CyKEGGParser: tailoring KEGG pathways to fit into systems biology analysis workflows
L Nersisyan, R Samsonyan, A Arakelyan - F1000Research, 2014 - ncbi.nlm.nih.gov
The KEGG pathway database is a widely accepted source for biomolecular pathway maps.
In this paper we present the CyKEGGParser app (http://apps. cytoscape. org/apps …
In this paper we present the CyKEGGParser app (http://apps. cytoscape. org/apps …
Gene annotation and pathway mapping in KEGG
KF Aoki-Kinoshita, M Kanehisa - Comparative genomics, 2007 - Springer
KEGG is a database resource (http://www. genome. jp/kegg/) that provides all knowledge
about genomes and their relationships to biological systems such as cells and whole …
about genomes and their relationships to biological systems such as cells and whole …
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout
Background Biologists make frequent use of databases containing large and complex
biological networks. One popular database is the Kyoto Encyclopedia of Genes and …
biological networks. One popular database is the Kyoto Encyclopedia of Genes and …
MicrobesFlux: a web platform for drafting metabolic models from the KEGG database
Background Concurrent with the efforts currently underway in mapping microbial genomes
using high-throughput sequencing methods, systems biologists are building metabolic …
using high-throughput sequencing methods, systems biologists are building metabolic …