Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers

CH Mayr, LM Simon, G Leuschner, M Ansari… - EMBO molecular …, 2021 - embopress.org
The correspondence of cell state changes in diseased organs to peripheral protein
signatures is currently unknown. Here, we generated and integrated single‐cell …

Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis

PA Reyfman, JM Walter, N Joshi… - American journal of …, 2019 - atsjournals.org
Rationale: The contributions of diverse cell populations in the human lung to pulmonary
fibrosis pathogenesis are poorly understood. Single-cell RNA sequencing can reveal …

Integrated plasma proteomics and lung transcriptomics reveal novel biomarkers in idiopathic pulmonary fibrosis

P Sivakumar, R Ammar, JR Thompson, Y Luo… - Respiratory …, 2021 - Springer
Background Idiopathic pulmonary fibrosis (IPF) is a fatal lung disease with a significant
unmet medical need. Development of transformational therapies for IPF is challenging in …

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage

D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu… - Nature …, 2019 - nature.com
Tissue fibrosis is a major cause of mortality that results from the deposition of matrix proteins
by an activated mesenchyme. Macrophages accumulate in fibrosis, but the role of specific …

[HTML][HTML] Impact of transcriptomics on our understanding of pulmonary fibrosis

M Vukmirovic, N Kaminski - Frontiers in medicine, 2018 - frontiersin.org
Idiopathic pulmonary fibrosis (IPF) is a lethal fibrotic lung disease characterized by aberrant
remodeling of the lung parenchyma with extensive changes to the phenotypes of all lung …

The idiopathic pulmonary fibrosis cell atlas

N Neumark, C Cosme Jr, KA Rose… - American Journal of …, 2020 - journals.physiology.org
Idiopathic pulmonary fibrosis (IPF) is a fatal lung disease that is characterized by
replacement of the normal lung anatomy with active remodeling and deposition of …

Multiple fibroblast subtypes contribute to matrix deposition in pulmonary fibrosis

X Liu, K Dai, X Zhang, G Huang, H Lynn… - American Journal of …, 2023 - atsjournals.org
Progressive pulmonary fibrosis results from a dysfunctional tissue repair response and is
characterized by fibroblast proliferation, activation, and invasion and extracellular matrix …

Blood transcriptomics predicts progression of pulmonary fibrosis and associated natural killer cells

Y Huang, JM Oldham, SF Ma, A Unterman… - American Journal of …, 2021 - atsjournals.org
Rationale: Disease activity in idiopathic pulmonary fibrosis (IPF) remains highly variable,
poorly understood, and difficult to predict. Objectives: To identify a predictor using short-term …

Serum proteomics identifies biomarkers associated with the pathogenesis of idiopathic pulmonary fibrosis

L Wang, M Zhu, Y Li, P Yan, Z Li, X Chen… - Molecular & Cellular …, 2023 - ASBMB
The heterogeneity of idiopathic pulmonary fibrosis (IPF) limits its diagnosis and treatment.
The association between the pathophysiological features and the serum protein signatures …

Mapping the lung proteome in cystic fibrosis

SA Gharib, T Vaisar, ML Aitken, DR Park… - Journal of proteome …, 2009 - ACS Publications
The pathophysiology of cystic fibrosis (CF) lung disease remains incompletely understood.
Novel mechanisms in the pathogenesis of CF lung disease may be discovered by studying …