Renal-tubule epithelial cell nomenclature for single-cell RNA-sequencing studies

L Chen, JZ Clark, JW Nelson, B Kaissling… - Journal of the …, 2019 - journals.lww.com
… for the epithelial cells that make up the mammalian renal tubule. The nomenclature list was
… adaptation of a prior, widely accepted nomenclature list for renal tubule segments published …

Common cell type nomenclature for the mammalian brain

JA Miller, NW Gouwens, B Tasic, F Collman… - Elife, 2020 - elifesciences.org
cell type information across multiple datasets. Here we present a generalizable nomenclature
convention, the common cell … myeloid cells revealed by deep Single-Cell RNA sequencing

Single-cell RNA-sequencing of the brain

R Cuevas-Diaz Duran, H Wei, JQ Wu - Clinical and translational medicine, 2017 - Springer
… -cell RNA-sequencing (scRNA-seq) is revolutionizing our understanding of the genomic,
transcriptomic and epigenomic landscapes of cells … to billions of diverse cells with either highly …

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex

Y Zhang, K Chen, SA Sloan, ML Bennett… - Journal of …, 2014 - Soc Neuroscience
… oligodendrocytes, microglia, endothelial cells, and pericytes from mouse … cell types by RNA
sequencing and used a sensitive algorithm to detect alternative splicing events in each cell

Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq

L Chen, JW Lee, CL Chou, AV Nair… - Proceedings of the …, 2017 - National Acad Sciences
… Therefore, we believe that the single-cell RNA-seq data for collecting duct cells is likely to
be representative of the cells as they are in the mice. Saxena et al. (31) have previously …

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

M Crow, A Paul, S Ballouz, ZJ Huang, J Gillis - Nature communications, 2018 - nature.com
… -cell RNA-sequencing (scRNA-seq) technology provides a new avenue to discover and
characterize cell … , that quantifies the degree to which cell types replicate across datasets, and …

[PDF][PDF] Single-cell RNA sequencing of lymph node stromal cells reveals niche-associated heterogeneity

LB Rodda, E Lu, ML Bennett, CL Sokol, X Wang… - Immunity, 2018 - cell.com
… Using droplet-based single-cell RNA sequencing, we identified nine peripheral LN non-…
cells (TRCs), marginal reticular cells, follicular dendritic cells (FDCs), and perivascular cells. We …

[PDF][PDF] DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

CS McGinnis, LM Murrow, ZJ Gartner - Cell systems, 2019 - cell.com
… Notably, the magnitude of transcriptional divergence necessary for DoubletFinder detection
did not always match established cell-type nomenclature, as DoubletFinder identified …

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

AC Villani, R Satija, G Reynolds, S Sarkizova… - Science, 2017 - science.org
… Using unbiased single-cell RNA sequencing (RNA-seq) of ~2400 cells, we identified six
human DCs and four monocyte subtypes in human blood. Our study reveals a new DC subset …

Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing

K Morarach, A Mikhailova, V Knoflach, F Memic… - Nature …, 2021 - nature.com
… Here, we define a molecular taxonomy of 12 enteric neuron classes within the myenteric
plexus of the mouse small intestine using single-cell RNA sequencing. We present cellcell