RNAcentral: a hub of information for non-coding RNA sequences

Nucleic Acids Research, 2019 - academic.oup.com
… In several studies RNAcentral sequences from an organism or RNA type of interest are
downloaded and then the novel ncRNAs are compared against the RNAcentral sequences to …

A single-cell sequencing guide for immunologists

P See, J Lum, J Chen, F Ginhoux - Frontiers in immunology, 2018 - frontiersin.org
… In recent years there has been a rapid increase in the use of single-cell sequencing (scRNA-seq) …
Single-cell RNA-sequencing (scRNA-seq) is now widely employed in immunological …

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys

BB Lake, S Chen, M Hoshi, N Plongthongkum… - Nature …, 2019 - nature.com
… Defining cellular and molecular identities within the kidney is necessary to understand its …
-based RNA sequencing (snDrop-Seq) that we use to resolve thirty distinct cell populations in …

Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data

R Hong, Y Koga, S Bandyadka, A Leshchyk… - Nature …, 2022 - nature.com
… To eliminate ambiguity of these terms, we adopt the nomenclature of “Droplet”, “Cell”, and
“FilteredCell” to describe the level of filtering on the dimensions of the count matrix while we …

Neuronal cell-type classification: challenges, opportunities and the path forward

H Zeng, JR Sanes - Nature Reviews Neuroscience, 2017 - nature.com
… At this time, the most mature, scalable and useful technique for molecular profiling of cell
type diversity is single-cell RNA sequencing (scRNA-seq) (Fig. 3a). This method is easily …

Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing

L Mazzurana, P Czarnewski, V Jonsson, L Wigge… - Cell research, 2021 - nature.com
cell (ILC)-mediated immunity in humans remains largely unknown. Here we used full-length
Smart-seq2 single-cell RNA-sequencing … with the nomenclature for naïve T cells. Importantly, …

Expanding dendritic cell nomenclature in the single-cell era

F Ginhoux, M Guilliams, M Merad - Nature Reviews Immunology, 2022 - nature.com
… -seq (a method for RNA sequencing together with the use of DNA-barcoded antibodies to
detect protein expression) to distinguish DC subsets based on surface protein expression. The …

Exploring Single-cell RNA sequencing as a decision-making tool in the clinical management of Fuchs' Endothelial Corneal Dystrophy

GN Yang, YBY Sun, PK Roberts, H Moka… - Progress in Retinal and …, 2024 - Elsevier
Single-cell RNA sequencing (scRNA-seq) has enabled the identification of novel gene
signatures and cell heterogeneity in numerous tissues and diseases. Here we review the use of …

Selenoprotein gene nomenclature

VN Gladyshev, ES Arnér, MJ Berry… - Journal of Biological …, 2016 - ASBMB
… and conflict with the approved nomenclature for several other genes. Therefore, there is
a need to implement a rational and coherent nomenclature system for selenoprotein-encoding …

Recommendations for nomenclature and definition of cell products intended for human cardiovascular use

, … Cell Therapy Research Network (CCTRN) - Cardiovascular …, 2022 - academic.oup.com
… Studies using RNA sequencingcell (ESC)-derived MSCs using RNA sequencing and
40–200 proteins using mass spectrometry-based proteomics. In another report, RNA sequencing