Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses

SF Elena, R Sanjuán, AV Borderı́a, PE Turner - Infection, Genetics and …, 2001 - Elsevier
… in the adaptation of RNA viruses to their cellular hosts, size of viral inoculum used to initiate
a … the level of competition and, hence, the ability for natural selection to improve viral fitness. …

Genetic instability of RNA viruses

JN Barr, R Fearns - Genome Stability, 2016 - Elsevier
… through selection. The high mutation rate of RNA viruses, coupled with their very high levels
of replication and the large population sizes that they can achieve means that RNA viruses

Molecular basis of adaptive convergence in experimental populations of RNA viruses

JM Cuevas, SF Elena, A Moya - Genetics, 2002 - academic.oup.com
… the evolutionary dynamics of RNA viruses has been poorly … as well as at the level of the
RNA secondary structure. So far, … selection, or selective sweeps in the evolution of RNA viruses

Quasispecies nature of RNA viruses: lessons from the past

K Singh, D Mehta, S Dumka, AS Chauhan, S Kumar - Vaccines, 2023 - mdpi.com
level correspond to the changes at the phenotypic level, which are naturally selected in the
… mutations occur in the viral genome and how their selection is influenced by environmental …

Reassortment in segmented RNA viruses: mechanisms and outcomes

SM McDonald, MI Nelson, PE Turner… - Nature Reviews …, 2016 - nature.com
… Moreover, for reassortants to selectively emerge at appreciable levels in the viral population,
they … the possible selection pressures that promote or temper the emergence of reassortant …

Evolution of sex in RNA viruses

L Chao - Trends in ecology & evolution, 1992 - cell.com
… by a mutation-selection … A second confirmation of purifying selection in RNA viruses comes
from molecular information. When Saitou and Neilsexamined sequence data on four proteins …

CpG usage in RNA viruses: data and hypotheses

X Cheng, N Virk, W Chen, S Ji, S Ji, Y Sun, X Wu - PloS one, 2013 - journals.plos.org
… suffer similar selection pressure as the viral RNAs. … level of CpG usage diversity in RNA
viruses. Our data revealed that base composition, synonymous codon usage and host selection

[HTML][HTML] RNA viruses and RNAi: quasispecies implications for viral escape

JB Presloid, IS Novella - Viruses, 2015 - mdpi.com
RNA virus to escape immune targeting, followed by a new immune response that can be, in
turn, followed by a new round of selection … that virus replication is minimized to levels that are …

The red queen reigns in the kingdom of RNA viruses.

DK Clarke, EA Duarte, SF Elena… - Proceedings of the …, 1994 - National Acad Sciences
RNA virus populations due to Muller's Ratchet (1, 2) and to show gains of fitness by natural
selection during virus … G and H back with virus populations of starting fitness levels. To do this …

The role of mutational robustness in RNA virus evolution

AS Lauring, J Frydman, R Andino - Nature Reviews Microbiology, 2013 - nature.com
… defined at the level of the viral genome. In many RNA viruses, the RNA genome contains
secondary … Because high mutation rates will select for evolved robustness, RNA viruses could …