Phylogenetic properties of RNA viruses

S Pompei, V Loreto, F Tria - 2012 - journals.plos.org
… patterns of different RNA viruses. Qualitatively, it has been observed that selection driven by
… to quantify the imbalance level of the inferred phylogenetic trees of the six RNA viruses. We …

[HTML][HTML] Rapid evolution of viral RNA genomes

E Domingo - The Journal of nutrition, 1997 - Elsevier
… high mutation rates operating during RNA virus replication and … Note the effect of selection
on codon 67, related to AZT … animals with adequate selenium levels. This example illustrates …

Evolutionary constraints on emergence of plant RNA viruses

SF Elena - 2010 - digital.csic.es
… be under strong stabilizing selection, suggesting that it is detrimental for the virus both to
reduce … is maintained to high levels in the viral RNA population by complementation. J. Virol. …

Costs and benefits of mutational robustness in RNA viruses

A Stern, S Bianco, M Te Yeh, C Wright, K Butcher… - Cell reports, 2014 - cell.com
selection regime, it is puzzling how viruses preserve functionality. Accordingly, it has been
proposed that RNA viruseslevels of robustness of a population in realistic scenarios of …

Dinucleotide and stop codon frequencies in single-stranded RNA viruses.

BK Rima, NV McFerran - Journal of General Virology, 1997 - microbiologyresearch.org
… To identify potential selection pressures which lead to RNA sequence … of different RNA
virus families and genera indeed contain stop codons in the − 1 and + 1 reading frames at levels

Pacing a small cage: mutation and RNA viruses

R Belshaw, A Gardner, A Rambaut… - Trends in ecology & …, 2008 - cell.com
… that, because most mutations are harmful, natural selection will cause the mutation rate to
… mutationally robust, that is, can tolerate high levels of mutation. As with lethal mutagenesis, …

Directed evolution as a tool for the selection of oncolytic RNA viruses with desired phenotypes

SS Zainutdinov, GV Kochneva, SV Netesov… - Oncolytic …, 2019 - Taylor & Francis
… It is also possible to select strains capable of killing a broader spectrum of cancer cell … virus
adaptation studies performed with members of four RNA virus families that are used for viral

Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses

JJ Holland, JC De La Torre, DK Clarke… - Journal of …, 1991 - Am Soc Microbiol
level tested for each MAR mutant-wild-type virus mixture. Total … established that RNA
viruses (and many DNA viruses) are … viruses to "foreign" host cells to select attenuated live-virus

Detecting natural selection in RNA virus populations using sequence summary statistics

S Bhatt, A Katzourakis, OG Pybus - Infection, Genetics and Evolution, 2010 - Elsevier
… to RNA virus data … virus-like mutational and demographic scenarios. Secondly, we apply
these methods to a compilation of ∼100 RNA virus alignments that represent natural RNA virus

The evolutionary genetics of emerging plant RNA viruses

SF Elena, S Bedhomme, P Carrasco… - Molecular plant …, 2011 - Am Phytopath Society
… 2008a), suggesting that one outcome of natural selection to optimize viral fitness in a novel
… Fitness tradeoffs, pleiotropic fitness effects, strong bottlenecks at different levels, an excess of …