SARS-CoV-2 main protease: A molecular dynamics study

D Suárez, N Díaz - Journal of chemical information and modeling, 2020 - ACS Publications
… of the hydrated SARS-CoV-2 main protease by means of 2.0 μs molecular dynamics (MD) …
complement previous crystallographic studies on the SARS-CoV-2 enzyme and, together …

Molecular dynamics simulation approach for discovering potential inhibitors against SARS-CoV-2: A structural review

S Ghahremanian, MM Rashidi, K Raeisi… - Journal of molecular …, 2022 - Elsevier
… on analyzing the molecular structure and … SARS-CoV-2 protein from the aspect of molecular
dynamics simulation. Pioneer English publications that have used molecular dynamics

Molecular dynamics studies reveal structural and functional features of the SARSCoV‐2 spike protein

L Pipitò, RM Rujan, CA Reynolds, G Deganutti - BioEssays, 2022 - Wiley Online Library
… The differences between SARS-CoV and SARS-CoV-2 were … behind SARS-CoV-2's
high infectivity and the molecularSARS-CoV-2 and its variants from the original SARS-CoV, …

Molecular dynamic simulations analysis of ritronavir and lopinavir as SARS-CoV 3CLpro inhibitors

V Nukoolkarn, VS Lee, M Malaisree… - Journal of theoretical …, 2008 - Elsevier
… inhibitors against the SARS coronavirus (SARS-CoV) is provided. Molecular dynamic
simulations were performed in order to investigate the structure and dynamics behaviours of the …

[HTML][HTML] The impact of D614G mutation of SARS-COV-2 on the efficacy of anti-viral drugs: A comparative molecular docking and molecular dynamics study

A Poustforoosh, H Hashemipour, B Tüzün… - Current …, 2022 - Springer
D614G is one of the most reported mutations in the spike protein of SARS-COV-2 that has
altered some crucial characteristics of coronaviruses, such as rate of infection and binding …

[HTML][HTML] Molecular Dynamics Studies on the structural characteristics for the stability prediction of SARS-CoV-2

KE Choi, JM Kim, JE Rhee, AK Park, EJ Kim… - … Journal of Molecular …, 2021 - mdpi.com
… the RBD of the SARS-CoV-2 with that of SARS-CoV-1, which … in binding with ACE2 for
SARS-CoV-2 and SARS-CoV-1 [16]. … , for computational analysis using molecular dynamics (MD) …

Discovery of New Hydroxyethylamine Analogs against 3CLpro Protein Target of SARS-CoV-2: Molecular Docking, Molecular Dynamics Simulation, and Structure …

S Kumar, PP Sharma, U Shankar… - Journal of Chemical …, 2020 - ACS Publications
The novel coronavirus, SARS-CoV-2, has caused a recent pandemic called COVID-19 and a
severe health threat around the world. In the current situation, the virus is rapidly spreading …

[HTML][HTML] Investigation of the effect of temperature on the structure of SARS-CoV-2 spike protein by molecular dynamics simulations

SL Rath, K Kumar - Frontiers in molecular biosciences, 2020 - frontiersin.org
molecular dynamics (MD) simulations we explore the dynamics of the Spike glycoprotein
of SARS-COV… This is the first molecular study on the environmental influence on the protein …

Targeting the 3CLpro and RdRp of SARS-CoV-2 with phytochemicals from medicinal plants of the Andean Region: molecular docking and molecular dynamics …

F Mosquera-Yuqui, N Lopez-Guerra… - … and Dynamics, 2022 - Taylor & Francis
Full article: Targeting the 3CLpro and RdRp of SARS-CoV-2 with phytochemicals from
medicinal plants of the Andean Region: molecular docking and molecular dynamics simulations …

Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro

O Sheik Amamuddy, GM Verkhivker… - Journal of chemical …, 2020 - ACS Publications
… , VAL157, and PRO184 have mutated more than once in SARS CoV-2; (2) the D48E variant
has lead … of SARS-CoV-2 M pro and investigate different aspects of their dynamics using MD. …