In silico studies on the comparative characterization of the interactions of SARS‐CoV‐2 spike glycoprotein with ACE‐2 receptor homologs and human TLRs

A Choudhury, S Mukherjee - Journal of medical virology, 2020 - Wiley Online Library
… The present study is, therefore, suggesting that spike protein expression in the virome of
SARS-CoV-2 is closely related to that of the Bat CoV RaTG13 and both forms of the virus might …

Targeting SARS-CoV-2 spike protein of COVID-19 with naturally occurring phytochemicals: an in silico study for drug development

P Pandey, JS Rane, A Chatterjee, A Kumar… - Journal of …, 2021 - Taylor & Francis
… In this in silico study, we have performed molecular docking experiments to ascertain the …
to the functional domains of the SARS-CoV-2 spike protein (SARS-CoV-2S), a viral surface …

An in-silico study of the mutation-associated effects on the spike protein of SARS-CoV-2, Omicron variant

TA Shishir, T Jannat, IB Naser - PLoS One, 2022 - journals.plos.org
… due to the large number of mutations found in the spike protein. Therefore, the purpose of
our study was to use an in silico approach to comprehensively analyze the spike protein of the …

Design of an epitope-based peptide vaccine against spike protein of human coronavirus: an in silico approach

AR Oany, AA Emran, TP Jyoti - Drug design, development and …, 2014 - Taylor & Francis
… A very recent study showed a highly conserved sequence in RNA directed RNA polymerase
… of a spike protein with 64.29% conservancy among the 56 spike proteins has drawn much …

[PDF][PDF] In silico study of the spike protein from SARS-CoV-2 interaction with ACE2: similarity with SARS-CoV, hot-spot analysis and effect of the receptor polymorphism

H Othman, Z Bouslama, JT Brandenburg, J Da Rocha… - BioRxiv, 2020 - researchgate.net
… Using in silico structural modelling, we brought additional evidence that the interface segment
of the spike protein … Finally, we studied the impact of eight different variants located at the …

[HTML][HTML] Role of changes in SARS-CoV-2 spike protein in the interaction with the human ACE2 receptor: An in silico analysis

JT Ortega, ML Serrano, FH Pujol, HR Rangel - EXCLI journal, 2020 - ncbi.nlm.nih.gov
… The aim of this study was to determine the mutation(s) in the sequence of the … The data
presented in this study suggest a higher affinity of the SARS-Cov-2 spike protein to the human …

In silico comparison of SARS-CoV-2 spike protein-ACE2 binding affinities across species and implications for virus origin

S Piplani, PK Singh, DA Winkler, N Petrovsky - Scientific reports, 2021 - nature.com
… in silico structural homology modelling, proteinprotein docking, and molecular dynamics
simulation study of SARS-CoV-2 spike protein’s … Spike protein exhibited the highest binding to …

Identification of Potential SARS-CoV-2 Main Protease and Spike Protein Inhibitors from the Genus Aloe: An In Silico Study for Drug Development

ME Abouelela, HK Assaf, RA Abdelhamid, ES Elkhyat… - Molecules, 2021 - mdpi.com
silico approach involving molecular docking, dynamics simulation, and binding free energy
calculation using SARS-CoV-2 essential proteins as main protease and spike proteinspike

In silico study of polyunsaturated fatty acids as potential SARS-CoV-2 spike protein closed conformation stabilizers: epidemiological and computational approaches

A Vivar-Sierra, MJ Araiza-Macías… - Molecules, 2021 - mdpi.com
… of the cryo-EM study showing the potential blockage of S-protein by LA, we decided to explore,
through in silico simulations, whether other PUFAs could also bind to S-protein (Figure 3) …

[HTML][HTML] In-silico study for the identification of potential destabilizers between the spike protein of SARS-CoV-2 and human ACE-2

J Medina-Barandica, N Contreras-Puentes… - Informatics in Medicine …, 2023 - Elsevier
study, 79 ligands were identified in the literature to be analyzed as ligands in molecular
docking as potential destabilizers between the spike protein … in this study do not present in silico