Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease

H Liu, T Doke, D Guo, X Sheng, Z Ma, J Park, HMT Vy… - Nature …, 2022 - nature.com
… More than 800 million people suffer from kidney disease, yet the mechanism of … transcriptome
in 686 samples and single-cell open chromatin in 57,229 kidney cells. Heritability analysis

Combined genetic and transcriptome analysis of patients with SLE: distinct, targetable signatures for susceptibility and severity

NI Panousis, GK Bertsias, H Ongen… - Annals of the …, 2019 - ard.bmj.com
… unmet need for biomarkers that reflect disease severity and the underlying molecular
mechanisms. We assessed transcriptome according to varying degrees of the SLEDAI-2K index.7 …

Integrative genomic and transcriptomic analysis in plasmablastic lymphoma identifies disruption of key regulatory pathways

HM Witte, A Künstner, N Hertel, HW Bernd… - Blood …, 2022 - ashpublications.org
… Integrative analysis of somatic mutations and gene expression profiles was performed …
targetable mechanism in PBL subgroups. Our characterization of a mutational and transcriptomic

Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report

D Kim, T Kobayashi, B Voisin, JH Jo, K Sakamoto… - Nature medicine, 2020 - nature.com
… determine transcriptomic changes that not only deepen our insight into disease mechanisms,
… or altered pathways that might be targeted via currently available monoclonal antibodies or …

[HTML][HTML] Transcriptome analysis of psoriasis in a large case–control sample: RNA-seq provides insights into disease mechanisms

B Li, LC Tsoi, WR Swindell, JE Gudjonsson… - Journal of Investigative …, 2014 - Elsevier
… transcriptional mechanisms underlying the differential expression of genes identified by
RNA-seq, we performed a transcription factor analysis using the Ingenuity Pathway Analysis

Alternative genetic mechanisms of BRAF activation in Langerhans cell histiocytosis

R Chakraborty, TM Burke, OA Hampton… - Blood, The Journal …, 2016 - ashpublications.org
mechanisms of aberrant MAPK pathway activation in LCH, we performed WES, RNA-seq,
and targeted … In this study, genomic and transcriptomic analyses revealed novel BRAF …

Spatial genomic, biochemical and cellular mechanisms underlying meningioma heterogeneity and evolution

CHG Lucas, K Mirchia, K Seo, H Najem, WC Chen… - Nature Genetics, 2024 - nature.com
… , but targetable mechanisms driving … mechanisms linking intratumor heterogeneity to tumor
evolution may reveal druggable dependencies. To do so, we use spatial transcriptomic and …

[PDF][PDF] Single-cell analyses inform mechanisms of myeloid-targeted therapies in colon cancer

L Zhang, Z Li, KM Skrzypczynska, Q Fang, W Zhang… - Cell, 2020 - cell.com
… scRNA-seq based transcriptome analyses in primary human tumors have not only revealed
… between T cell populations through integrating analysis of transcriptomes and T cell …

Integrated genomic and transcriptomic analysis of human brain metastases identifies alterations of potential clinical significance

JM Saunus, MCJ Quinn, AM Patch… - The Journal of …, 2015 - Wiley Online Library
Targeted therapy is critically under-utilized, and our understanding of mechanisms … To
address these deficiencies, we investigated the genomic and transcriptomic landscapes …

Mechanisms of epileptogenesis and potential treatment targets

A Pitkänen, K Lukasiuk - The Lancet Neurology, 2011 - thelancet.com
… These mechanisms have been targeted to prevent epileptogenesis in animal models. …
Furthermore, the analysis of transcriptomic data to identify common epileptogenic mechanisms in …