Physical layer security is emerging as a promising means of ensuring secrecy in wireless communications. The key idea is to exploit the characteristics of wireless channels such as fading or noise to transmit a message from the source to the intended receiver while keeping this message confidential from eavesdroppers. Topics covered in Trusted Communications with Physical Layer Security for 5G and Beyond include secrecy metrics for physical layer security over fading channels; trusted wireless communications with spatial multiplexing; directional modulation enabled physical layer wireless security; secure waveform for 5G systems; confidential and energy efficient communications using physical layer security; secure data networks with channel uncertainty; antenna selection strategies for wiretap channels; physical layer security for massive MIMO systems, millimeter wave cellular networks, non-orthogonal multiple access, multiuser relay networks, cognitive radio networks, MIMOME-OFDM systems; wirelessly powered communication systems and D2D-enabled cellular networks; and security solutions and applications at the physical layer, including case studies of secret key generation and secrecy coding in communication nodes and terminals.