Virtual alignment of pathology image series for multi-gigapixel whole slide images

CD Gatenbee, AM Baker, S Prabhakaran… - Nature …, 2023 - nature.com
images. To address both challenges, we developed Virtual Alignment of pathoLogy Image
Series (VALIS), software which enables generation of highly multiplexed images by aligning

Virtual Microscopy Large Slide Automated Acquisition: Error Analysis and Validation

AV Mancino, A Roger, DL Muscolo… - MEDINFO 2015 …, 2015 - ebooks.iospress.nl
… offset to the right, left, upwards, and downwards, SSIM map zones which originally appeared
dark turn to white, meaning a good alignment in that part of the image, and vice versa. …

Creating a virtual slide map from sputum smear images for region-of-interest localisation in automated microscopy

B Patel, TS Douglas - Computer methods and programs in biomedicine, 2012 - Elsevier
… of reference, position and orientation, on the slide so that it can be used to automatically …
We use virtual slide maps together with geometric hashing to localise a query image, which …

GAN-based virtual re-staining: a promising solution for whole slide image analysis

Z Xu, X Huang, CF Moro, B Bozóky, Q Zhang - arXiv preprint arXiv …, 2019 - arxiv.org
… [20] propose a hyper stain inspector for image alignment and cancer detection as well. … of
unpaired image-to-image translation as ”virtual staining” for histopathology image analysis. We …

Real-time deformable registration of multi-modal whole slides for digital pathology

D Mueller, D Vossen, B Hulsken - Computerized Medical Imaging and …, 2011 - Elsevier
… presents a method for the spatial alignment of multi-modal whole slide digital microscopy …
for the spatial alignment of multi-modal whole slide digital microscopy images. The proposed …

Zooming in: high resolution 3D reconstruction of differently stained histological whole slide images

J Lotz, J Berger, B Müller, K Breuhahn… - Medical Imaging …, 2014 - spiedigitallibrary.org
… We efficiently align consecutive slides at increasingly fine … a macroscopic, coarse alignment
of the slides as preprocessing, … of the registered slides was performed on virtual cuts through …

Using a modified standard microscope to generate virtual slides

DJ Romer, KH Yearsley… - The Anatomical Record …, 2003 - Wiley Online Library
Images in this figure were purposely underexposed to demonstrate efficiency and range of …
Camera Alignment (Squaring) Of paramount importance to image acquisition is the alignment

Building of a composite virtual slide from contiguous tissue samples

B Plancoulaine, M Oger, N Elie, P Belhomme… - Diagnostic …, 2014 - Springer
… Currently available microscope slide scanners produce whole slide images at various … the
left to align its right-side edge pixels; it then straightens the fragment on the right to align its left-…

GloFlow: Whole slide image stitching from video using optical flow and global image alignment

V Krishna, A Joshi, D Vrabac, P Bulterys… - Medical Image …, 2021 - Springer
… information used for slide stitching. We propose GloFlow, a two-stage method for creating a
whole slide image using optical flow-based image registration with global alignment using a …

Virtual slide mosaicing using feature descriptors and a registration consistency measure

DE Romo, J Tarquino… - … Seminar on Medical …, 2013 - spiedigitallibrary.org
… of images is an unrealistically labor intensive task that is, however, a fundamental step in
the analysis of virtual slides: For virtual slide creation the automation of the aligning process is …