Strategy for discovering chemical inhibitors of human cyclophilin A: focused library design, virtual screening, chemical synthesis and bioassay

J Li, J Zhang, J Chen, X Luo, W Zhu… - Journal of …, 2006 - ACS Publications
… focused combinatorial library design, virtual screening, … a focused combinatorial library
containing 255 molecules … −g) were selected by using virtual screening against the X-ray crystal …

High-throughput virtual screening and validation of a SARS-CoV-2 main protease noncovalent inhibitor

A Clyde, S Galanie, DW Kneller, H Ma… - Journal of chemical …, 2021 - ACS Publications
virtual screening (HTVS) is a common step of drug discovery, enabling rapid, low-cost screening
of significantly larger compound libraries … In this study, we aimed to balance library size …

Natural product-likeness score and its application for prioritization of compound libraries

P Ertl, S Roggo, A Schuffenhauer - Journal of chemical information …, 2008 - ACS Publications
… space covered by natural products. This … virtual screening, prioritization of compound
libraries toward NP-likeness, and design of building blocks for the synthesis of NP-like libraries

Cheminformatics approaches to analyze diversity in compound screening libraries

LB Akella, D DeCaprio - Current Opinion in Chemical Biology, 2010 - Elsevier
… Results of the visualization will depend on the descriptors chosen, as shown by Bender
et al. in a comparison of 37 different descriptor sets in a virtual screening exercise of 83,793 …

Community benchmarks for virtual screening

JJ Irwin - Journal of computer-aided molecular design, 2008 - Springer
Virtual screening is the most practical way to leverage structure for ligand discovery, and
as … Virtual screening orients and scores a library of small molecules in the binding site of a …

NCI program for natural product discovery: A publicly-accessible library of natural product fractions for high-throughput screening

CC Thornburg, JR Britt, JR Evans, RK Akee… - ACS chemical …, 2018 - ACS Publications
… , extended timelines that complicate natural product-based drug … screening (HTS) of crude
natural product extract libraries in … (11,15,16) Herein, we outline the methods development for …

… SARS-CoV-2 targeted, protease inhibitor focused and protein–protein interaction inhibitor focused molecular libraries for virtual screening and drug design

S Kralj, M Jukič, U Bren - International Journal of Molecular Sciences, 2021 - mdpi.com
… docking screening against seven SARS-CoV-2 target proteins and one human (ACE2) target
protein. The library was extended by virtual screening of the natural products obtained from …

Virtual screening for novel Staphylococcus aureus NorA efflux pump inhibitors from natural products

KM Thai, TD Ngo, TV Phan, TD Tran… - Medicinal …, 2015 - ingentaconnect.com
… large chemical libraries for compounds with efflux pump inhibitory activity and reported 27
flavonoides and 2863 TCM compounds discovered through the virtual screening process. The …

Current status of virtual combinatorial library design

L Weber - QSAR & Combinatorial Science, 2005 - Wiley Online Library
… In summary, virtual screening of combinatorial libraries is successfully emerging as a productive
tool in the hit- and lead discovery process. For making this step forward, it was essential …

Analysing and navigating natural products space for generating small, diverse, but representative chemical libraries

S O'Hagan, DB Kell - Biotechnology Journal, 2018 - Wiley Online Library
… availability of two natural products libraries, amounting to … ” in smaller and more usable
libraries of 96, 384, 1152, and 1920 … the granularity of the natural products space using a simple …