Evaluations of molecular docking programs for virtual screening

K Onodera, K Satou, H Hirota - … information and modeling, 2007 - ACS Publications
… Since the correct prediction of ligand−protein … of a docking program for virtual screening.
However, the performances on the docking pose prediction do not directly reflect the screening

Comparison of several molecular docking programs: pose prediction and virtual screening accuracy

JB Cross, DC Thompson, BK Rai… - … and modeling, 2009 - ACS Publications
… for cognate ligand docking and the HTVS protocol for virtual screening have been used.
The SP protocol was not included in the main section of the virtual screening study, since this …

Accessible high-throughput virtual screening molecular docking software for students and educators

RB Jacob, T Andersen… - PLoS computational …, 2012 - journals.plos.org
… We survey low cost high-throughput virtual screening (HTVS) computer programs for instructors
who wish to demonstrate molecular docking in their courses. Since HTVS programs are …

Comparison of automated docking programs as virtual screening tools

MD Cummings, RL DesJarlais, AC Gibbs… - Journal of medicinal …, 2005 - ACS Publications
… In 1991, Shoichet and Kuntz 62 noted that in proteinprotein docking studies with DOCK
many false positives represented what seemed to be, upon visual inspection, reasonable …

New approach to molecular docking and its application to virtual screening of chemical databases

CA Baxter, CW Murray, B Waszkowycz… - Journal of chemical …, 2000 - ACS Publications
Virtual screening involves a number of … of a virtual compound collection to a more manageable
size. In this paper we describe the use of molecular docking as a virtual screening tool. In …

Virtual screening, molecular docking and QSAR studies in drug discovery and development programme

M Rudrapal, D Chetia - Journal of drug delivery and therapeutics, 2020 - jddtonline.info
tool in … molecules to their biological activity. In this paper, a comprehensive review on
several computational tools of SBDD and LBDD such as virtual screening, molecular docking and …

Validation of molecular docking programs for virtual screening against dihydropteroate synthase

KE Hevener, W Zhao, DM Ball… - … and modeling, 2009 - ACS Publications
… anthracis DHPS (Figure 4) was used for all the molecular docking exercises performed in
this study. We have determined the structures of B. anthracis DHPS in complex with several …

Molecular docking-based computational platform for high-throughput virtual screening

B Zhang, H Li, K Yu, Z Jin - CCF Transactions on High Performance …, 2022 - Springer
… speed of molecular docking software and the strategy of high-throughput molecular docking
… -scale virtual screening. The development of Web services helps lower the barrier to drug …

Practices in molecular docking and structure-based virtual screening

RN Dos Santos, LG Ferreira… - … drug discovery and design, 2018 - Springer
… generated by the molecular docking program present implicit non-polar hydrogen atoms.
This result does not affect the overall interpretation of the molecular interactions; however, it is …

[HTML][HTML] Practical considerations in virtual screening and molecular docking

M Berry, B Fielding, J Gamieldien - Emerging trends in …, 2015 - ncbi.nlm.nih.gov
… a virtual screening study, while simultaneously providing a theoretical explanation of docking
… This review will provide guidelines, but there is no “one-rule-fits-all” in molecular docking. …