Pharmacophore based virtual screening, molecular docking, molecular dynamics and MM-GBSA approach for identification of prospective SARS-CoV-2 inhibitor from …

BK Kumar, n Faheem, KVGC Sekhar… - Journal of …, 2022 - Taylor & Francis
… input for docking study was downloaded from virtual screening hits of … docking studies. The
generated output file (Best conformations of the ligands) was further used for docking studies (…

Molecular docking-based computational platform for high-throughput virtual screening

B Zhang, H Li, K Yu, Z Jin - CCF Transactions on High Performance …, 2022 - Springer
… In this study, we analyzed the challenges of virtual screening, with the aim of identifying … of
molecular docking software and the strategy of high-throughput molecular docking calculation, …

Identification of novel Src inhibitors: Pharmacophore-based virtual screening, molecular docking and molecular dynamics simulations

Y Zhang, T Zhang, S Tu, Z Zhang, F Meng - Molecules, 2020 - mdpi.com
… In the present study, pharmacophore-based virtual screening and molecular docking were
… from the pharmacophore-based virtual screening were subjected to molecular docking

Pharmacophore mapping-based virtual screening followed by molecular docking studies in search of potential acetylcholinesterase inhibitors as anti-Alzheimer's …

P Ambure, S Kar, K Roy - Biosystems, 2014 - Elsevier
… them on the basis of their interaction patterns and docking score. In this study, virtual screening
via drug-like ADME filter, pharmacophore model, and docking studies was carried out for …

Ligand‐Based Virtual Screening and Molecular Docking Studies to Identify the Critical Chemical Features of Potent Cathepsin D Inhibitors

S Sakkiah, S Thangapandian… - Chemical Biology & Drug …, 2012 - Wiley Online Library
Virtual screening of small molecule is one aspect of a sophisticated approach in drug discovery
(44). Virtual screening … work flow of virtual screening strategy used in this study. Among ∼…

[HTML][HTML] Systematic virtual screening in search of SARS CoV-2 inhibitors against spike glycoprotein: pharmacophore screening, molecular docking, ADMET analysis …

TM Dhameliya, PR Nagar, ND Gajjar - Molecular diversity, 2022 - Springer
… , ADMET analysis and molecular dynamics (MD) simulation [32]. … the virtual screening of
small molecules against RdRp [33] and Mpro [34] using molecular docking, ADMET analysis

Pharmacophore modelling, virtual screening and molecular docking studies on PLD1 inhibitors

DK Behera, PM Behera, L Acharya… - … Environmental Research, 2017 - Taylor & Francis
… We have created a small set of molecules with diverse structures that have been identified
from the virtual screening study followed by a clustering analysis. It is hoped that this study will …

Structure-based virtual screening, molecular docking, molecular dynamics simulation, and metabolic reactivity studies of quinazoline derivatives for their anti-EGFR …

AA Shah, S Ahmad, MK Yadav, K Raza… - Current Medicinal …, 2024 - ingentaconnect.com
research aims to develop novel quinazoline derivatives through structure-based virtual
screening, molecular docking, and molecular … structure- based virtual screening and the Lipinski …

New approach to molecular docking and its application to virtual screening of chemical databases

CA Baxter, CW Murray, B Waszkowycz… - Journal of chemical …, 2000 - ACS Publications
Virtual screening involves a number of different … a virtual compound collection to a more
manageable size. In this paper we describe the use of molecular docking as a virtual screening

Novel urushiol derivatives as HDAC8 inhibitors: Rational design, virtual screening, molecular docking and molecular dynamics studies

H Zhou, C Wang, T Deng, R Tao… - Journal of Biomolecular …, 2018 - Taylor & Francis
studied by docking and MD simulation; class III HDAC inhibitors were designed by molecular
docking and virtual screening… HDAC6 were researched through docking and MD simulation …