Dockey: a modern integrated tool for large-scale molecular docking and virtual screening

L Du, C Geng, Q Zeng, T Huang, J Tang… - Briefings in …, 2023 - academic.oup.com
… In this study, we developed a robust and highly usable GUI tool named Dockey for conducting
molecular docking and virtual screening experiments based on AutoDock and its variants. …

Pharmacophore-enabled virtual screening, molecular docking and molecular dynamics studies for identification of potent and selective histone deacetylase 8 …

K Kashyap, R Kakkar - Computers in Biology and Medicine, 2020 - Elsevier
… In the present work, a detailed virtual screening regimen has been undertaken by using the
two pharmacophore models obtained previously [24] as 3D search queries to identify novel …

Pharmacophore-based virtual screening, synthesis, biological evaluation, and molecular docking study of novel pyrrolizines bearing urea/thiourea moieties with …

AM Shawky, NA Ibrahim, MAS Abourehab… - Journal of enzyme …, 2021 - Taylor & Francis
… In the current study, virtual screening of a small library of 1302 pyrrolizines bearing urea/thiourea
moieties was performed. The top-scoring hits were synthesised and evaluated for their …

The discovery of potential cyclin A/CDK2 inhibitors: a combination of 3D QSAR pharmacophore modeling, virtual screening, and molecular docking studies

A Ece, F Sevin - Medicinal chemistry research, 2013 - Springer
test at 95 % confidence level and test set prediction (r = 0.96). Hypo1 was then employed for
virtual screening … of pharmacophore modeling with virtual screening and molecular docking

Discover potential inhibitors for PFKFB3 using 3D-QSAR, virtual screening, molecular docking and molecular dynamics simulation

Y Bao, L Zhou, D Dai, X Zhu, Y Hu… - Journal of Receptors and …, 2018 - Taylor & Francis
Virtual screening and drug-likeness analysis In order to discover potential PFKFB3 inhibitors,
virtual screening was employed in this study. … In order to retain the highly active molecules, …

Tubulin inhibitors: pharmacophore modeling, virtual screening and molecular docking

M Niu, J Qin, C Tian, X Yan, F Dong, Z Cheng… - Acta Pharmacologica …, 2014 - nature.com
… to screen the Specs database. Hit compounds were subjected to molecular docking study
using a Molecular Operating Environment (MOE) software and to biological evaluation in vitro. …

Pharmacophore-based virtual screening and molecular docking to identify promising dual inhibitors of human acetylcholinesterase and butyrylcholinesterase

AMS Mascarenhas, RBM de Almeida… - Journal of …, 2021 - Taylor & Francis
study aims identify promising dual inhibitors against hAChE and hBuChE by in silico approaches
(pharmacophore-based virtual screening and molecular docking… in virtual screening at …

Identification of RdRp inhibitors against SARS-CoV-2 through E-pharmacophore-based virtual screening, molecular docking and MD simulations approaches

HM Rehman, M Sajjad, MA Ali, R Gul, M Naveed… - International Journal of …, 2023 - Elsevier
… GLIDE (Grid-based Ligand Docking with Energetics) module of Schrödinger was … stepwise
molecular docking studies to screen the top hits. Firstly, the High throughput Virtual Screening

Molecular docking based virtual screening of natural compounds as potential BACE1 inhibitors: 3D QSAR pharmacophore mapping and molecular dynamics analysis

A Kumar, S Roy, S Tripathi… - Journal of Biomolecular …, 2016 - Taylor & Francis
… basis for selecting the better molecule from virtual screening. Enoxaparin showed better
MolDock … In virtual screenings of InterBioScreen, we find out a natural low molecular weight …

Structure based high-throughput virtual screening, molecular docking and molecular dynamics Study of anticancer natural compounds against fimbriae (FimA) protein …

S Singh, PK Yadav, AK Singh - Molecular Diversity, 2024 - Springer
… The anticancer properties of chemical constituents used in this study have already been …
study utilizes the High-Throughput Virtual Screening followed by precise molecular docking