α-Helix peptide folding and unfolding activation barriers: a nanosecond UV resonance Raman study

IK Lednev, AS Karnoup, MC Sparrow… - Journal of the American …, 1999 - ACS Publications
IK Lednev, AS Karnoup, MC Sparrow, SA Asher
Journal of the American Chemical Society, 1999ACS Publications
We used UV resonance Raman spectroscopy to characterize the equilibrium conformation
and the kinetics of thermal denaturation of a 21 amino acid, mainly alanine, α-helical peptide
(AP). The 204-nm UV resonance Raman spectra show selective enhancements of the amide
vibrations, whose intensities and frequencies strongly depend on the peptide secondary
structure. These AP Raman spectra were accurately modeled by a linear combination of the
temperature-dependent Raman spectra of the pure random coil and the pure α-helix …
We used UV resonance Raman spectroscopy to characterize the equilibrium conformation and the kinetics of thermal denaturation of a 21 amino acid, mainly alanine, α-helical peptide (AP). The 204-nm UV resonance Raman spectra show selective enhancements of the amide vibrations, whose intensities and frequencies strongly depend on the peptide secondary structure. These AP Raman spectra were accurately modeled by a linear combination of the temperature-dependent Raman spectra of the pure random coil and the pure α-helix conformations; this demonstrates that the AP helix−coil equilibrium is well-described by a two-state model. We constructed a new transient UV resonance Raman spectrometer and developed the necessary methodologies to measure the nanosecond relaxation of AP following a 3-ns T-jump. We obtained the T-jump by using a 1.9-μm IR pulse that heats the solvent water. We probed the AP relaxation using delayed 204-nm excitation pulses which excite the Raman spectra of the amide backbone vibrations. We observe little AP structural changes within the first 40 ns, after which the α-helix starts unfolding. We determined the temperature dependence of the folding and unfolding rates and found that the unfolding rate constants show Arrhenius-type behavior with an apparent ∼8 kcal/mol activation barrier and a reciprocal rate constant of 240 ± 60 ns at 37 °C. However, the folding rate constants show a negative activation barrier, indicating a failure of transition-state theory in the simple two-state modeling of AP thermal unfolding, which assumes a temperature-independent potential energy profile along the reaction coordinate. Our measurements of the initial steps in the α-helical structure evolution support recent protein folding landscape and funnel theories; our temperature-dependent rate constants sense the energy landscape complexity at the earliest stages of folding and unfolding.
ACS Publications
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