A high-quality genome assembly and annotation of the gray mangrove, Avicennia marina

G Friis, J Vizueta, EG Smith, DR Nelson, B Khraiwesh… - G3, 2021 - academic.oup.com
high-quality, chromosome-level assembly obtained using proximity ligation libraries as a
resource for genome… We sequenced and assembled a reference genome of the gray mangrove. …

A reference-grade genome identifies salt-tolerance genes from the salt-secreting mangrove species Avicennia marina

P Natarajan, AK Murugesan, G Govindan… - Communications …, 2021 - nature.com
… We observed ~99% completeness of the genome as measured by BUSCO analysis, and
98… marina genome assembled in this study as nearly complete and a reference-grade genome

The genome of a mangrove plant, Avicennia marina, provides insights into adaptation to coastal intertidal habitats

D Ma, Q Ding, Z Guo, C Xu, P Liang, Z Zhao, S Song… - Planta, 2022 - Springer
genome of the Avicennia marina, a typical true mangrove with a size of 480.43 Mb, contig
N50 of 11.33 Mb and 30,956 annotated … We acquired a high-quality genome at chromosome-…

Mangrove tree (Avicennia marina): insight into chloroplast genome evolutionary divergence and its comparison with related species from family Acanthaceae

S Asaf, AL Khan, M Numan, A Al-Harrasi - Scientific Reports, 2021 - nature.com
… and analysis showed a complete chloroplast genome of 150,279 bp… Gray mangroves have
been divided into categories based on their … were used for mapping only high quality reads. …

De Novo Reference Assembly of the Upriver Orange Mangrove (Bruguiera sexangula) Genome

W Pootakham, C Naktang, C Sonthirod… - Genome Biology and …, 2022 - academic.oup.com
… 23,978 (92.09%) were functionally annotated and 17,598 (67.59%) … high-quality genome
assembly along with its annotation data will be of interest to researchers studying mangrove

Convergent adaptation of the genomes of woody plants at the land–sea interface

…, International Mangrove Consortium… - National science …, 2020 - academic.oup.com
… From the site-convergence analysis, we conclude that the … with the genome-sequencing data
of Avicennia marina var. … each mangrove lineage (Sonneratia, Rhizophoreae and Avicennia

Expansion and adaptive evolution of the WRKY transcription factor family in Avicennia mangrove trees

X Feng, G Li, W Wu, H Lyu, J Wang, C Liu… - Marine Life Science & …, 2023 - Springer
… species Avicennia marina. Comparative genomic analysis showed that two recent whole-genome
Recently, we also de novo assembled high-quality reference genomes of six other …

A de novo reference assembly of the yellow mangrove Ceriops zippeliana genome

W Pootakham, C Sonthirod, C Naktang… - G3, 2022 - academic.oup.com
… In this study, we present a high-quality assembly of the C. zippeliana … Short-read RNA
sequences were mapped to the assembly during the initial step of annotation using the PASA2 …

Tissue-Specific Transcriptomes Outline Halophyte Adaptive Strategies in the Gray Mangrove (Avicennia marina)

DR Nelson, A Chaiboonchoe, KM Hazzouri… - Agronomy, 2022 - mdpi.com
… Our characterization of the expressed functions was facilitated by the reference genome
and coding sequence annotations [7]. In addition, we used the high-quality reference genome

Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments

ZF Zhang, LR Liu, YP Pan, J Pan, M Li - Microbiome, 2023 - Springer
… Bootstrap values are labeled with gray solid circles … - and high-quality prokaryotic MAGs and
9 710 assembled fungal contigs, … In summary, these results highlight the predominant role of …