… We tested BLAT, LAST and UBLAST. All three programs ran in a hundredth to a 25th of the … the genomes compared become more dissimilar, with BLAT, a program optimized for quickly …
… We thus decided to compare the overannotation estimates yielded using three such programs, UBLAST, LAST and the Blast-LikeAlignmentTool (BLAT), and to test non-redundant …
M Bhagwat, L Young… - Current protocols in …, 2012 - Wiley Online Library
… The BLAST-LikeAlignmentTool (BLAT) is used to find genomic sequences that match a protein or DNA sequence submitted by the user. BLAT is … It was developed to align millions of …
M Wang, L Kong - BMC bioinformatics, 2019 - Springer
… The blat is a widely used sequence alignmenttool. It is especially useful for aligning long … However, the blattool is single threaded and when used to map whole genome or whole …
N Homer - Bfast: Blat-like fast accurate search tool, 2009 - vcru.wisc.edu
… for creating and distributing the BLAT program (Kent (2002)), which was both a motivation for this work, and was also the basis for our initial practical large scale alignment pipeline. We …
… BLATBLAST-likealignmenttool … In conclusion, sequence alignmenttools play a crucial role in the field of bioinformatics and genomics, enabling researchers to compare biological …
Y Li, R Yang - BMC bioinformatics, 2024 - Springer
… , the demand for efficient bioinformatics tools for sequence analysis has become paramount. BLAST-likealignmenttool (BLAT), a sequence alignmenttool, faces limitations in …
… We chose only BLAST and BLAT in the accuracy test because these two tools are widely … , BLAST, BLAT, and CLAST. Fourthly, we removed hits from the results for each alignmenttool if …
KM Chao, L Zhang - Sequence Comparison: Theory and Methods, 2009 - Springer
… Section 4.4 describes BLAT, short for “BLAST-likealignmenttool.” It is often used to search for the database sequences that are closely related to the query sequences such as …