… One of our aims is to use CellDesigner as a simulation platform, and thus integration
capability with native simulation library has been implemented. SBML ODE Solver (Machné et al. …

… As an approach, we have developed CellDesigner [5], a process diagram editor for gene-…
and biochemical networks. CellDesigner currently supports model creation, simulation, and …

… dynamics of gene-regulatory and biochemical networks is … network building tools and
simulation environments using standardized technologies play an important role in the software …

… This CellDesigner plug-in allows one to specify the quantitative dynamics of biological
networks, ie, metabolic, signal transduction and gene regulatory networks based on the SBGN. …

… One of our aims is to use CellDesigner as a simulation platform, and thus integration
capability with native simulation library has been implemented. SBML ODE Solver (Machné et al. …

… Understanding the logic and dynamics of gene-regulatory and biochemical networks is a
major … developed CellDesigner, a modeling tool of gene-regulatory and biochemical networks. …

… KEGG2SBML converts KEGG’s pathway files into a format we can open in CellDesigner. …
Once a mathematical description of the biochemical network has been created, it is desirable to …

… HSim launcher functionality of BioNetCAD allows the automatic generation of HSim input
files from the CellDesigner model as defined by the user and also launches the HSim software. …

… formalisms (supported by software tools) available to model biological systems with a … ranking
scores grouped for each tool respectively (Style, Protein Lounge, and CellDesigner). The x-…

… CellDesigner presents the best accomplished diagrammatic interface as regards … simulation
software provides a formidable array of tools for applying mathematical models in biological …