… CellTracker (details in Supplementary Material S4) by using three different datasets (fluorescence,
DIC and phase contrast images, Supplementary Material S5). We only … , CellTracker is …

… It only requires freely available and open-source software (ZeroCostDL4Mic and Fiji), and
does not require any coding knowledge from the users, making it a versatile and powerful tool …

We previously developed the CellPhe toolkit, an open-source R package for automated cell
phenotyping from ptychography time-lapse videos. To align with the growing adoption of …

… For data export, we provide the option to save either the complete HDF5 file or only
selected parts (eg the tracking results but no image data) to minimise storage space usage. …

… In this paper, we focus on the association step, and by cell tracker we mean an algorithm
for … In this section, we justify the proposed selection of lengths for dummy (padding) links …

… It only requires freely available and open-source software (ZeroCostDL4Mic and Fiji), and
does not require any coding knowledge from the users, making it a versatile and powerful tool …

Visualization of cell migration via time-lapse microscopy has greatly advanced our understanding
of the immune system. However, subtle differences in migration dynamics are easily …

… It provides a solid base for the cell tracker below. … Two dummy cells s0 and q0 are also
created for accommodating possible unmatched cases due to cell leaving (resp., or entering) the …

… Then, a stack of images was opened in CellTracker program. All the procedure for ‘Vignetting
Correction’ and ‘Automatic Alignment’ was performed as instructed by CellTracker …

… We will compare the results of our proposal to Cell-Tracker and MTrack2. Both perform
fully automatic tracking, do not restrict the cell type to a single particle, and do not require …